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UniProtKB - Q20880 (Q20880_CAEEL)
Protein
Submitted name:
Col_cuticle_N domain-containing protein
Gene
col-121
Organism
Caenorhabditis elegans
Status
Functioni
GO - Molecular functioni
- structural constituent of cuticle Source: InterPro
GO - Biological processi
- anatomical structure development Source: UniProt
Names & Taxonomyi
Protein namesi | Submitted name: Col_cuticle_N domain-containing proteinImported |
Gene namesi | Name:col-121Imported ORF Names:CELE_F56D5.1Imported, F56D5.1Imported |
Organismi | Caenorhabditis elegansImported |
Taxonomic identifieri | 6239 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditina › Rhabditomorpha › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis |
Proteomesi |
|
Organism-specific databases
WormBasei | F56D5.1 ; CE05967 ; WBGene00000695 ; col-121 |
Subcellular locationi
Other locations
- integral component of membrane Source: UniProtKB-KW
Topology
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Transmembranei | 12 – 31 | HelicalSequence analysisAdd BLAST | 20 |
Keywords - Cellular componenti
MembranePTM / Processingi
Keywords - PTMi
Disulfide bondARBA annotationProteomic databases
EPDi | Q20880 |
PaxDbi | Q20880 |
PeptideAtlasi | Q20880 |
Expressioni
Gene expression databases
Bgeei | WBGene00000695, Expressed in multi-cellular organism and 4 other tissues |
Interactioni
Subunit structurei
Collagen polypeptide chains are complexed within the cuticle by disulfide bonds and other types of covalent cross-links.
ARBA annotationProtein-protein interaction databases
STRINGi | 6239.F56D5.1 |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 8 – 60 | Col_cuticle_NInterPro annotationAdd BLAST | 53 |
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 97 – 269 | DisorderedSequence analysisAdd BLAST | 173 | |
Regioni | 290 – 359 | DisorderedSequence analysisAdd BLAST | 70 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 221 – 239 | Polar residuesSequence analysisAdd BLAST | 19 | |
Compositional biasi | 330 – 352 | Polar residuesSequence analysisAdd BLAST | 23 |
Sequence similaritiesi
Belongs to the cuticular collagen family.ARBA annotation
Keywords - Domaini
RepeatARBA annotation, Transmembrane, Transmembrane helixSequence analysisPhylogenomic databases
eggNOGi | KOG3544, Eukaryota |
GeneTreei | ENSGT00970000196241 |
HOGENOMi | CLU_001074_4_0_1 |
InParanoidi | Q20880 |
OMAi | VIWAELI |
OrthoDBi | 1210061at2759 |
PhylomeDBi | Q20880 |
Family and domain databases
InterProi | View protein in InterPro IPR002486, Col_cuticle_N IPR008160, Collagen |
Pfami | View protein in Pfam PF01484, Col_cuticle_N, 1 hit PF01391, Collagen, 1 hit |
SMARTi | View protein in SMART SM01088, Col_cuticle_N, 1 hit |
i Sequence
Sequence statusi: Complete.
Q20880-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MAVDVARLGA RLICLVSALT VGFTLITFIH ISSKIQKTEN EIIGNQSAFK
60 70 80 90 100
AKSQVIWAEL METGRSLRIP RSSYGTDEKK GVLHQCSQCT RLHCPQGPIG
110 120 130 140 150
EEGSPGNDGQ PGTPGKPGSP GLEGVDVDLE PQEELPCSIC PAGPQGPRGA
160 170 180 190 200
QGERGLPGNA GRKGKSGKSG HPGQPGGIGA SGAKGPTGTR GTPGMKGPPG
210 220 230 240 250
DTIIAGEGIK GPPGLQGSQG PKGPPGNSGR SSNIRGPSGK PGQQGGIGGT
260 270 280 290 300
GKFGKYGEQG GIGAPGEPGL PATYCPSDCG VNTILSQFGS RAQHPESING
310 320 330 340 350
EDNGAPAANT EEYNSEERIE SPAPPAPQPT TNQQQETVAA AASEQESFEE
SSYRSFFGH
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX284604 Genomic DNA Translation: CAA93499.1 |
PIRi | T22774 |
RefSeqi | NP_501655.1, NM_069254.4 |
Genome annotation databases
EnsemblMetazoai | F56D5.1.1; F56D5.1.1; WBGene00000695 |
GeneIDi | 177771 |
KEGGi | cel:CELE_F56D5.1 |
UCSCi | F56D5.1, c. elegans |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX284604 Genomic DNA Translation: CAA93499.1 |
PIRi | T22774 |
RefSeqi | NP_501655.1, NM_069254.4 |
3D structure databases
AlphaFoldDBi | Q20880 |
SMRi | Q20880 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 6239.F56D5.1 |
Proteomic databases
EPDi | Q20880 |
PaxDbi | Q20880 |
PeptideAtlasi | Q20880 |
Genome annotation databases
EnsemblMetazoai | F56D5.1.1; F56D5.1.1; WBGene00000695 |
GeneIDi | 177771 |
KEGGi | cel:CELE_F56D5.1 |
UCSCi | F56D5.1, c. elegans |
Organism-specific databases
CTDi | 177771 |
WormBasei | F56D5.1 ; CE05967 ; WBGene00000695 ; col-121 |
Phylogenomic databases
eggNOGi | KOG3544, Eukaryota |
GeneTreei | ENSGT00970000196241 |
HOGENOMi | CLU_001074_4_0_1 |
InParanoidi | Q20880 |
OMAi | VIWAELI |
OrthoDBi | 1210061at2759 |
PhylomeDBi | Q20880 |
Gene expression databases
Bgeei | WBGene00000695, Expressed in multi-cellular organism and 4 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR002486, Col_cuticle_N IPR008160, Collagen |
Pfami | View protein in Pfam PF01484, Col_cuticle_N, 1 hit PF01391, Collagen, 1 hit |
SMARTi | View protein in SMART SM01088, Col_cuticle_N, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | Q20880_CAEEL | |
Accessioni | Q20880Primary (citable) accession number: Q20880 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | November 1, 1996 |
Last sequence update: | November 1, 1996 | |
Last modified: | May 25, 2022 | |
This is version 143 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |