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Protein

60S ribosomal protein L23a 2

Gene

rpl-25.2

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein binds to a specific region on the 26S rRNA.By similarity

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L23a 2
Gene namesi
ORF Names:F52B5.6
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome I

Organism-specific databases

WormBaseiF52B5.6 ; CE05721 ; WBGene00004439 ; rpl-25.2

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001294711 – 14660S ribosomal protein L23a 2Add BLAST146

Proteomic databases

EPDiQ20647
PaxDbiQ20647
PeptideAtlasiQ20647
PRIDEiQ20647

PTM databases

iPTMnetiQ20647

Expressioni

Gene expression databases

BgeeiWBGene00004439

Interactioni

Protein-protein interaction databases

BioGridi38051, 1 interactor
DIPiDIP-27075N
STRINGi6239.F52B5.6.2

Structurei

3D structure databases

ProteinModelPortaliQ20647
SMRiQ20647
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1751 Eukaryota
COG0089 LUCA
GeneTreeiENSGT00390000003263
HOGENOMiHOG000231365
InParanoidiQ20647
KOiK02893
OMAiHKVIIHP
OrthoDBiEOG091G0UYL
PhylomeDBiQ20647

Family and domain databases

Gene3Di3.30.70.330, 1 hit
HAMAPiMF_01369_A Ribosomal_L23_A, 1 hit
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR019985 Ribosomal_L23
IPR012678 Ribosomal_L23/L15e_core_dom_sf
IPR001014 Ribosomal_L23/L25_CS
IPR005633 Ribosomal_L23/L25_N
IPR013025 Ribosomal_L25/23
PfamiView protein in Pfam
PF00276 Ribosomal_L23, 1 hit
PF03939 Ribosomal_L23eN, 1 hit
SUPFAMiSSF54189 SSF54189, 1 hit
TIGRFAMsiTIGR03636 uL23_arch, 1 hit
PROSITEiView protein in PROSITE
PS00050 RIBOSOMAL_L23, 1 hit

Sequencei

Sequence statusi: Complete.

Q20647-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MAPSSNKVGK AIQAKKAVVK GSKTNVRKNV RTSVHFRRPK TLVTARAPRY
60 70 80 90 100
ARKSAPARDK LDSFAVIKAP HTTESSMKKI EDHNTLVFIV DEKANKHHIK
110 120 130 140
RAVHALYNVK AVKVNTLITP LQQKKAYVRL ASDYDALDVA NKIGFI
Length:146
Mass (Da):16,283
Last modified:November 1, 1996 - v1
Checksum:i3380545260EA88C7
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z75541 Genomic DNA Translation: CAA99858.1
PIRiT22496
RefSeqiNP_492263.1, NM_059862.3
UniGeneiCel.8711

Genome annotation databases

EnsemblMetazoaiF52B5.6.1; F52B5.6.1; WBGene00004439
F52B5.6.2; F52B5.6.2; WBGene00004439
F52B5.6.3; F52B5.6.3; WBGene00004439
F52B5.6.4; F52B5.6.4; WBGene00004439
F52B5.6.5; F52B5.6.5; WBGene00004439
GeneIDi172617
KEGGicel:CELE_F52B5.6
UCSCiF52B5.6.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiR23A2_CAEEL
AccessioniPrimary (citable) accession number: Q20647
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: May 23, 2018
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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