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Protein

40S ribosomal protein S9

Gene

rps-9

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-CEL-72702 Ribosomal scanning and start codon recognition
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S9
Gene namesi
Name:rps-9
ORF Names:F40F8.10
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF40F8.10 ; CE05849 ; WBGene00004478 ; rps-9

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001326931 – 18940S ribosomal protein S9Add BLAST189

Proteomic databases

EPDiQ20228
PaxDbiQ20228
PeptideAtlasiQ20228
PRIDEiQ20228

Expressioni

Gene expression databases

BgeeiWBGene00004478

Interactioni

Protein-protein interaction databases

BioGridi40009, 3 interactors
DIPiDIP-25908N
IntActiQ20228, 3 interactors
STRINGi6239.F40F8.10.1

Structurei

3D structure databases

ProteinModelPortaliQ20228
SMRiQ20228
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini107 – 181S4 RNA-bindingPROSITE-ProRule annotationAdd BLAST75

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG3301 Eukaryota
COG0522 LUCA
GeneTreeiENSGT00550000074829
HOGENOMiHOG000194525
InParanoidiQ20228
KOiK02997
OMAiTHGHIAI
OrthoDBiEOG091G0S57
PhylomeDBiQ20228

Family and domain databases

CDDicd00165 S4, 1 hit
Gene3Di3.10.290.10, 1 hit
InterProiView protein in InterPro
IPR022801 Ribosomal_S4/S9
IPR005710 Ribosomal_S4/S9_euk/arc
IPR001912 Ribosomal_S4/S9_N
IPR018079 Ribosomal_S4_CS
IPR002942 S4_RNA-bd
IPR036986 S4_RNA-bd_sf
PANTHERiPTHR11831 PTHR11831, 1 hit
PfamiView protein in Pfam
PF00163 Ribosomal_S4, 1 hit
PF01479 S4, 1 hit
SMARTiView protein in SMART
SM01390 Ribosomal_S4, 1 hit
TIGRFAMsiTIGR01018 uS4_arch, 1 hit
PROSITEiView protein in PROSITE
PS00632 RIBOSOMAL_S4, 1 hit
PS50889 S4, 1 hit

Sequencei

Sequence statusi: Complete.

Q20228-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MARLKTVQSK VTKSPRRPFE KERLDQELKL IGTFGLKNKR EVWRVKYTLA
60 70 80 90 100
KVRKAARELL TLEDKDPKRL FEGNALLRRL VKIGVLDETK MKLDYVLGLK
110 120 130 140 150
VEDFLERRLQ TQVFKLGLAK SIHHARILIK QHHIRVRRQV VDVPSFIVRL
160 170 180
DSQKHIDFSL QSPYGGGRPG RVKRRTLRKG DGAGGDDEE
Length:189
Mass (Da):21,957
Last modified:November 1, 1996 - v1
Checksum:i160430FBBECECD6B
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z69302 Genomic DNA Translation: CAA93262.1
PIRiT22034
RefSeqiNP_496384.1, NM_063983.4
UniGeneiCel.18245

Genome annotation databases

EnsemblMetazoaiF40F8.10; F40F8.10; WBGene00004478
GeneIDi174699
KEGGicel:CELE_F40F8.10
UCSCiF40F8.10.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRS9_CAEEL
AccessioniPrimary (citable) accession number: Q20228
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: July 18, 2018
This is version 125 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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