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Protein
Submitted name:

Ribosomal Protein, Small subunit

Gene

rps-11

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • determination of adult lifespan Source: WormBase
  • translation Source: GO_Central

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal proteinUniRule annotationImported

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-CEL-72702 Ribosomal scanning and start codon recognition
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Submitted name:
Ribosomal Protein, Small subunitImported
Gene namesi
Name:rps-11Imported
ORF Names:CELE_F40F11.1Imported, F40F11.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF40F11.1 ; CE05860 ; WBGene00004480 ; rps-11

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Proteomic databases

EPDiQ20206
PaxDbiQ20206
PeptideAtlasiQ20206
PRIDEiQ20206

Expressioni

Gene expression databases

BgeeiWBGene00004480

Interactioni

Protein-protein interaction databases

DIPiDIP-26076N
IntActiQ20206, 1 interactor
STRINGi6239.F40F11.1.1

Structurei

3D structure databases

ProteinModelPortaliQ20206
SMRiQ20206
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini4 – 70Ribosomal_S17_NInterPro annotationAdd BLAST67

Sequence similaritiesi

Belongs to the universal ribosomal protein uS17 family.UniRule annotation

Phylogenomic databases

eggNOGiKOG1728 Eukaryota
COG0186 LUCA
GeneTreeiENSGT00390000002732
HOGENOMiHOG000231341
InParanoidiQ20206
KOiK02949
OMAiKKYERYE
OrthoDBiEOG091G0QVV
PhylomeDBiQ20206

Family and domain databases

InterProiView protein in InterPro
IPR012340 NA-bd_OB-fold
IPR032440 Ribosomal_S11_N
IPR000266 Ribosomal_S17/S11
IPR028333 Ribosomal_S17_arc-typ
IPR019979 Ribosomal_S17_CS
PANTHERiPTHR10744 PTHR10744, 1 hit
PfamiView protein in Pfam
PF00366 Ribosomal_S17, 1 hit
PF16205 Ribosomal_S17_N, 1 hit
PRINTSiPR00973 RIBOSOMALS17
ProDomiView protein in ProDom or Entries sharing at least one domain
PD001295 Ribosomal_S17, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR03630 uS17_arch, 1 hit
PROSITEiView protein in PROSITE
PS00056 RIBOSOMAL_S17, 1 hit

Sequencei

Sequence statusi: Complete.

Q20206-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSEQTERAFL KQPTVNLNNK ARILAGSKKT PRYIREVGLG FKAPRDAVEG
60 70 80 90 100
TYIDKKCPWA GNVPIRGMIL TGVVLKNKMT RTIVVRRDYL HYIKKYRRYE
110 120 130 140 150
KRHKNVPAHC SPAFRDIHPG DLVTIGECRP LSKTVRFNVL KVNKSGTSKK

GFSKF
Length:155
Mass (Da):17,745
Last modified:November 1, 1996 - v1
Checksum:iEF84542A264E51BD
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CAA97792.1
PIRiT22027
RefSeqiNP_502186.1, NM_069785.5
UniGeneiCel.7378

Genome annotation databases

EnsemblMetazoaiF40F11.1; F40F11.1; WBGene00004480
GeneIDi178083
KEGGicel:CELE_F40F11.1
UCSCiF40F11.1.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiQ20206_CAEEL
AccessioniPrimary (citable) accession number: Q20206
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: July 18, 2018
This is version 148 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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