UniProtKB - Q1RMQ2 (Q1RMQ2_BOVIN)
Protein
H/ACA ribonucleoprotein complex non-core subunit NAF1
Gene
NAF1
Organism
Bos taurus (Bovine)
Status
Functioni
GO - Molecular functioni
- RNA binding Source: InterPro
GO - Biological processi
- box H/ACA snoRNP assembly Source: InterPro
- pseudouridine synthesis Source: InterPro
- rRNA processing Source: UniProtKB-KW
Keywordsi
Biological process | Ribosome biogenesisARBA annotation, rRNA processingARBA annotation |
Names & Taxonomyi
Protein namesi | Recommended name: H/ACA ribonucleoprotein complex non-core subunit NAF1ARBA annotation |
Gene namesi | |
Organismi | Bos taurus (Bovine)Imported |
Taxonomic identifieri | 9913 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Mammalia › Eutheria › Laurasiatheria › Artiodactyla › Ruminantia › Pecora › Bovidae › Bovinae › Bos |
Proteomesi |
|
Organism-specific databases
VGNCi | VGNC:54460, NAF1 |
Subcellular locationi
Nucleus
- Nucleus ARBA annotation
Nucleus
- nucleus Source: UniProtKB-SubCell
Other locations
- small nucleolar ribonucleoprotein complex Source: InterPro
Keywords - Cellular componenti
NucleusARBA annotationExpressioni
Gene expression databases
Bgeei | ENSBTAG00000034700, Expressed in spermatocyte and 19 other tissues |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 24 – 118 | DisorderedSequence analysisAdd BLAST | 95 | |
Regioni | 259 – 301 | DisorderedSequence analysisAdd BLAST | 43 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 75 – 89 | AcidicSequence analysisAdd BLAST | 15 | |
Compositional biasi | 90 – 113 | PolarSequence analysisAdd BLAST | 24 | |
Compositional biasi | 275 – 290 | PolyampholyteSequence analysisAdd BLAST | 16 |
Sequence similaritiesi
Belongs to the NAF1 family.ARBA annotation
Phylogenomic databases
eggNOGi | KOG2236, Eukaryota |
GeneTreei | ENSGT00390000004697 |
HOGENOMi | CLU_032218_0_0_1 |
OMAi | RICCVRT |
TreeFami | TF313273 |
Family and domain databases
Gene3Di | 2.40.10.230, 1 hit |
InterProi | View protein in InterPro IPR038664, Gar1/Naf1_Cbf5-bd_sf IPR007504, H/ACA_rnp_Gar1/Naf1 IPR040309, Naf1 IPR009000, Transl_B-barrel_sf |
PANTHERi | PTHR31633, PTHR31633, 1 hit |
Pfami | View protein in Pfam PF04410, Gar1, 1 hit |
SUPFAMi | SSF50447, SSF50447, 1 hit |
(1+)i Sequence
Sequence statusi: Complete.
This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All
Q1RMQ2-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MEVVEASAAQ LQTLKFGGAG VGIGQEVAAP APGPAPVAAP PADQGAPESA
60 70 80 90 100
GEPSPQLLPP SLPGPPLEGS GLETSDSDSD SDSDSDSETD SDSSSSSSSS
110 120 130 140 150
SSSSSSSSRM SLPPVLSDGE DDLLVEKENK NFPLKTKDEL LLSELPSVEE
160 170 180 190 200
LTIVLPEDIE LKPLGMVSSI IEQLVIIESM TNVPPVNEET VIFKTDRQAA
210 220 230 240 250
GKIFEIFGPV AHPFYVLRFN SSEHIENKGI KIKDTMYFAP SMKDFTQYIF
260 270 280 290 300
TEKLKQDRGS DASWKNDQEP PPEALDFSDD EKEKEAKQRK KSQIQGRKKF
310 320 330 340 350
RSEFNEPGED FAEVHHNWNV HSSASEHSKG YHNREFTRGF SQGENTEKKS
360
IIMSWQKSCV
Computationally mapped potential isoform sequencesi
There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basketA0A3Q1N8I9 | A0A3Q1N8I9_BOVIN | H/ACA ribonucleoprotein complex non... | NAF1 | 363 | Annotation score: |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BC114778 mRNA Translation: AAI14779.1 |
Genome annotation databases
Ensembli | ENSBTAT00000052013; ENSBTAP00000049022; ENSBTAG00000034700 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BC114778 mRNA Translation: AAI14779.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 9913.ENSBTAP00000049022 |
Genome annotation databases
Ensembli | ENSBTAT00000052013; ENSBTAP00000049022; ENSBTAG00000034700 |
Organism-specific databases
VGNCi | VGNC:54460, NAF1 |
Phylogenomic databases
eggNOGi | KOG2236, Eukaryota |
GeneTreei | ENSGT00390000004697 |
HOGENOMi | CLU_032218_0_0_1 |
OMAi | RICCVRT |
TreeFami | TF313273 |
Gene expression databases
Bgeei | ENSBTAG00000034700, Expressed in spermatocyte and 19 other tissues |
Family and domain databases
Gene3Di | 2.40.10.230, 1 hit |
InterProi | View protein in InterPro IPR038664, Gar1/Naf1_Cbf5-bd_sf IPR007504, H/ACA_rnp_Gar1/Naf1 IPR040309, Naf1 IPR009000, Transl_B-barrel_sf |
PANTHERi | PTHR31633, PTHR31633, 1 hit |
Pfami | View protein in Pfam PF04410, Gar1, 1 hit |
SUPFAMi | SSF50447, SSF50447, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | Q1RMQ2_BOVIN | |
Accessioni | Q1RMQ2Primary (citable) accession number: Q1RMQ2 Secondary accession number(s): F1N4Z1 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | May 16, 2006 |
Last sequence update: | May 16, 2006 | |
Last modified: | December 2, 2020 | |
This is version 108 of the entry and version 1 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |