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Protein

Beta-(1-->2)glucan export ATP-binding/permease protein NdvA

Gene

ndvA

Organism
Nitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Involved in beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).By similarity

Catalytic activityi

ATP + H2O + beta-glucan(In) = ADP + phosphate + beta-glucan(Out).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi378 – 385ATPUniRule annotation8

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
Biological processSugar transport, Transport
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-(1-->2)glucan export ATP-binding/permease protein NdvAUniRule annotation (EC:3.6.3.42UniRule annotation)
Gene namesi
Name:ndvAUniRule annotation
Ordered Locus Names:Nham_3736
OrganismiNitrobacter hamburgensis (strain DSM 10229 / NCIMB 13809 / X14)
Taxonomic identifieri323097 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeNitrobacter
Proteomesi
  • UP000001953 Componenti: Chromosome

Subcellular locationi

  • Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei22 – 42HelicalUniRule annotationAdd BLAST21
Transmembranei68 – 88HelicalUniRule annotationAdd BLAST21
Transmembranei146 – 166HelicalUniRule annotationAdd BLAST21
Transmembranei167 – 187HelicalUniRule annotationAdd BLAST21
Transmembranei254 – 274HelicalUniRule annotationAdd BLAST21
Transmembranei285 – 305HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002902481 – 593Beta-(1-->2)glucan export ATP-binding/permease protein NdvAAdd BLAST593

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi323097.Nham_3736

Structurei

3D structure databases

ProteinModelPortaliQ1QH37
SMRiQ1QH37
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 311ABC transmembrane type-1UniRule annotationAdd BLAST291
Domaini345 – 579ABC transporterUniRule annotationAdd BLAST235

Domaini

In NdvA the ATP-binding domain (NBD) and the transmembrane domain (TMD) are fused.

Sequence similaritiesi

Belongs to the ABC transporter superfamily. Beta-(1-->2)glucan exporter (TC 3.A.1.108.1) family. [View classification]UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105BZ1 Bacteria
COG1132 LUCA
KOiK06147
OMAiMPVLSWW
OrthoDBiPOG091H00DB

Family and domain databases

Gene3Di1.20.1560.10, 1 hit
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR011527 ABC1_TM_dom
IPR036640 ABC1_TM_sf
IPR017902 ABC_bGlucan_ATPase
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR005896 NdvA
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00664 ABC_membrane, 1 hit
PF00005 ABC_tran, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
SSF90123 SSF90123, 2 hits
TIGRFAMsiTIGR01192 chvA, 1 hit
PROSITEiView protein in PROSITE
PS50929 ABC_TM1F, 1 hit
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 1 hit
PS51317 NDVA, 1 hit

Sequencei

Sequence statusi: Complete.

Q1QH37-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSMLRLYTRV LELLGKEARL GWILAGANLL LAGAQFAEPV LFGRIVDVLS
60 70 80 90 100
GSPAAGPFGM TSTSPWPLLA VWVVFGLFTI LCGVIVALQA DRLSHRQRQA
110 120 130 140 150
VLTGYFEHIM QLPLTYHAGT HSGRLMKVML QGTDALWRLW LGFFREHFAA
160 170 180 190 200
MMSLVVLLPL SLTINWRLAI LLFALCIVFT MLTTLVVRRT FDMQNEVEAH
210 220 230 240 250
FSDLSARASD ALGNVALVQS FVRVDAEVQG LRFVVDKLLA AQMPVLSWWA
260 270 280 290 300
VVTVMTRAST TITILAIFAV GIVLNQRGMT SVGEIVMFVS FATMLIQRLE
310 320 330 340 350
QVVSFINSVF MEAPRLKEFF NVLDAVPAVR DRPDAIDAGR LQGLVEFHDV
360 370 380 390 400
SFSYDGKRPA VEDLSFVALP GQTIALVGPT GAGKSTAVAL LHRAFDPQSG
410 420 430 440 450
IIKIDGMDIR GLTLASLRRN IGVVFQEALL FDRSIAENLR VGKPDASEEE
460 470 480 490 500
MRLAASRAQA LGFIERADRK FDTHAGERGR MLSGGERQRL SIARALLKDP
510 520 530 540 550
PILILDEATS ALDAVTEAKV NAALDEVMKG RTTFVIAHRL STIRNATRIL
560 570 580 590
VFENGRVIEN GTFDELLARG GHFARLAKAQ FMTQDGSRIG QPS
Length:593
Mass (Da):65,144
Last modified:May 16, 2006 - v1
Checksum:iF2AB34AC9039B6CF
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000319 Genomic DNA Translation: ABE64460.1

Genome annotation databases

EnsemblBacteriaiABE64460; ABE64460; Nham_3736
KEGGinha:Nham_3736

Similar proteinsi

Entry informationi

Entry nameiNDVA_NITHX
AccessioniPrimary (citable) accession number: Q1QH37
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: May 16, 2006
Last modified: November 22, 2017
This is version 89 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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