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Protein

Beta-(1-->2)glucan export ATP-binding/permease protein NdvA

Gene

ndvA

Organism
Rhizobium leguminosarum bv. viciae (strain 3841)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Involved in beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).By similarity

Catalytic activityi

ATP + H2O + beta-glucan(In) = ADP + phosphate + beta-glucan(Out).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi368 – 375ATPUniRule annotation8

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
Biological processSugar transport, Transport
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-(1-->2)glucan export ATP-binding/permease protein NdvAUniRule annotation (EC:3.6.3.42UniRule annotation)
Gene namesi
Name:ndvAUniRule annotation
Ordered Locus Names:RL4640
OrganismiRhizobium leguminosarum bv. viciae (strain 3841)
Taxonomic identifieri216596 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
Proteomesi
  • UP000006575 Componenti: Chromosome

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei23 – 43HelicalUniRule annotationAdd BLAST21
Transmembranei57 – 77HelicalUniRule annotationAdd BLAST21
Transmembranei128 – 148HelicalUniRule annotationAdd BLAST21
Transmembranei158 – 178HelicalUniRule annotationAdd BLAST21
Transmembranei248 – 268HelicalUniRule annotationAdd BLAST21
Transmembranei272 – 292HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002902511 – 587Beta-(1-->2)glucan export ATP-binding/permease protein NdvAAdd BLAST587

Proteomic databases

PRIDEiQ1MAB5

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi216596.RL4640

Structurei

3D structure databases

ProteinModelPortaliQ1MAB5
SMRiQ1MAB5
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 301ABC transmembrane type-1UniRule annotationAdd BLAST281
Domaini335 – 569ABC transporterUniRule annotationAdd BLAST235

Domaini

In NdvA the ATP-binding domain (NBD) and the transmembrane domain (TMD) are fused.

Sequence similaritiesi

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105BZ1 Bacteria
COG1132 LUCA
KOiK06147
OMAiMPVLSWW
OrthoDBiPOG091H00DB

Family and domain databases

Gene3Di1.20.1560.10, 1 hit
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR011527 ABC1_TM_dom
IPR036640 ABC1_TM_sf
IPR017902 ABC_bGlucan_ATPase
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR005896 NdvA
IPR027417 P-loop_NTPase
IPR039421 Type_I_exporter
PANTHERiPTHR24221 PTHR24221, 1 hit
PfamiView protein in Pfam
PF00664 ABC_membrane, 1 hit
PF00005 ABC_tran, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
SSF90123 SSF90123, 1 hit
TIGRFAMsiTIGR01192 chvA, 1 hit
PROSITEiView protein in PROSITE
PS50929 ABC_TM1F, 1 hit
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 1 hit
PS51317 NDVA, 1 hit

Sequencei

Sequence statusi: Complete.

Q1MAB5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTLFKVYARA LRYLGAYKLR VSLVVVANIV LATITIAEPI LFGRIIDAIS
60 70 80 90 100
GKGEVKPILF MWATFAVFNT IAFVLVAREA DRLAHGRRAT LLTEAFGRII
110 120 130 140 150
SMPLGWHHQR GTSNALHTLL RACETLFGLW LEFMRNHLST VIALALLIPT
160 170 180 190 200
AMSMDLRLSA VLMVLAIAYW LIGRVVMSRT KDGQASVENH YHTVFSHVSD
210 220 230 240 250
SISNVSVLHS YNRIEAETRA LKSFADRLLE AQYPVLDWWA IASALNRMAS
260 270 280 290 300
TIAMMVVLII GTMLVQAGQL RVGDVIAFIG FANLLIGRLD LMRQFATQIF
310 320 330 340 350
EARSKLEEFY ALEDSVRERE EPAGNGEIKD VKGAIEFRDV SFGFGNSSQG
360 370 380 390 400
LHNVSFSVKA GQTVAIVGPT GAGKTTLVNL LQRVYDAQGG KILVDGTDIT
410 420 430 440 450
KVTRKSLRRH IATVFQDAGL LNRSISDNIR LGREGASEEE MRRAAEAAAA
460 470 480 490 500
ADFIETREDR YDTHVGERGN KLSGGERQRI AIARAILKDA PILVLDEATS
510 520 530 540 550
ALDVETEARV KAAIDNLRQN RTTFIIAHRL STVREADMVL FLDDGRVVEQ
560 570 580
GSFDELSHSN GRFAALLRAS GILTDEEVRK AHTTEAA
Length:587
Mass (Da):64,762
Last modified:May 30, 2006 - v1
Checksum:i519413311A574D37
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM236080 Genomic DNA Translation: CAK10123.1

Genome annotation databases

EnsemblBacteriaiCAK10123; CAK10123; RL4640
KEGGirle:RL4640

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM236080 Genomic DNA Translation: CAK10123.1

3D structure databases

ProteinModelPortaliQ1MAB5
SMRiQ1MAB5
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi216596.RL4640

Proteomic databases

PRIDEiQ1MAB5

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAK10123; CAK10123; RL4640
KEGGirle:RL4640

Phylogenomic databases

eggNOGiENOG4105BZ1 Bacteria
COG1132 LUCA
KOiK06147
OMAiMPVLSWW
OrthoDBiPOG091H00DB

Family and domain databases

Gene3Di1.20.1560.10, 1 hit
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR011527 ABC1_TM_dom
IPR036640 ABC1_TM_sf
IPR017902 ABC_bGlucan_ATPase
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR005896 NdvA
IPR027417 P-loop_NTPase
IPR039421 Type_I_exporter
PANTHERiPTHR24221 PTHR24221, 1 hit
PfamiView protein in Pfam
PF00664 ABC_membrane, 1 hit
PF00005 ABC_tran, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
SSF90123 SSF90123, 1 hit
TIGRFAMsiTIGR01192 chvA, 1 hit
PROSITEiView protein in PROSITE
PS50929 ABC_TM1F, 1 hit
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 1 hit
PS51317 NDVA, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiNDVA_RHIL3
AccessioniPrimary (citable) accession number: Q1MAB5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: May 30, 2006
Last modified: November 7, 2018
This is version 89 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health

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