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Entry version 74 (31 Jul 2019)
Sequence version 1 (30 May 2006)
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Protein
Submitted name:

Conjugal transfer protein TraA

Gene

traAp10

Organism
Rhizobium leguminosarum bv. viciae (strain 3841)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Conjugal transfer protein TraAImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traAp10Imported
Ordered Locus Names:pRL100219Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid pRL10Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiRhizobium leguminosarum bv. viciae (strain 3841)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri216596 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesRhizobiaceaeRhizobium/Agrobacterium groupRhizobium
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006575 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Plasmid pRL10

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini17 – 229MobA_MobLInterPro annotationAdd BLAST213
Domaini700 – 745(+)RNA virus helicase C-terminalInterPro annotationAdd BLAST46
Domaini866 – 952Bep_C_terminalInterPro annotationAdd BLAST87

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni611 – 632DisorderedSequence analysisAdd BLAST22
Regioni782 – 843DisorderedSequence analysisAdd BLAST62

Phylogenomic databases

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000138087

Identification of Orthologs from Complete Genome Data

More...
OMAi
LPREMSQ

Database of Orthologous Groups

More...
OrthoDBi
961809at2

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR027351 (+)RNA_virus_helicase_core_dom
IPR041533 Bep_BID
IPR005053 MobA_MobL
IPR027417 P-loop_NTPase
IPR014136 TraA_Ti

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF17841 Bep_C_terminal, 1 hit
PF03389 MobA_MobL, 1 hit
PF01443 Viral_helicase1, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52540 SSF52540, 2 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR02768 TraA_Ti, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q1M7T3-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAIYHLSMKP IARSGGRSAV ASAAYRAAVR LTNERDGLTH DFSNRQGVEH
60 70 80 90 100
AEIVLPARSS AYWAMKRSAL WNAAERAEKR SDARIAREFE VALPHELTPD
110 120 130 140 150
QRLVLTRAFA ADLANRYGAA VDFAIHRPGE ASDIRNSHAH LMMTTRQVTE
160 170 180 190 200
AGLGDKTLLE RENRWLLANH LPPSQLQLKD LRQAWEHLAN THLERAGLDI
210 220 230 240 250
RIDNRSHLEA GITIEPTEHV GVHATEINRQ GGAVSRVRIS PQSAERNAET
260 270 280 290 300
IRRRPDEILK LITNEKSVFT RYDIARALHR YINDDPQTFQ NAFAAVMASK
310 320 330 340 350
ALVELRPEST GLRGRDGEAR YSTVEMVAIE GVIASNVMAM KARQNHGVAK
360 370 380 390 400
RNVDAAIAEQ DRSIKAGNPS PGQGLSAEQR HAIEHVTGPG QIAVVIGFAG
410 420 430 440 450
AGKSTMLAAA RHAWEAQGYR VHGAALAGKA AEGLEQSSGI TSRTLASWEY
460 470 480 490 500
SWQADRGRLN ARDVFVIDEG GMVGSRQLAR FVDEVKRAGA KLVLVGDHEQ
510 520 530 540 550
LQAIGAGAPF RAIAEAVGHA QLSEVRRQKA DWQKRASIDF ASHRTAAGLS
560 570 580 590 600
AYEARGSVHL KTDRAETLKA IIADYVADRS ANPNDTRIAM AHRRDDVRAI
610 620 630 640 650
NAGIRARLQD RGELAKGTNP PGDKGEEHTY QTNNGRRAFA RGDRIVFLEN
660 670 680 690 700
DRDLGVKNGM LGEVIAVAPD AIQVRLDGKA QTQDGQRQVT VPVNRYQSFD
710 720 730 740 750
HGYATTIHKT QGATVDRSFV LASTTMDRHL TYVAMTRHRE EVQLYAGLDA
760 770 780 790 800
FKTVRALTET LSRSGVKETT LDYTHDFANR RGMEDRRGQG ESEVASQGIS
810 820 830 840 850
KGIQHIPDTA VPKPLQEPRP PTPLAVRSIA DGGSPHQDRN DDERRVLVAA
860 870 880 890 900
VKTYAMSVEA VGRSKAMPAF DRDWAAAKQL APQVFNDAPA AMDVLRGRIL
910 920 930 940 950
DENADPVALA SQLSASPETI GALAGKTGLF GDNAERKHAL SRIDALASHV
960 970 980 990 1000
RQSANTWQRR LSAECGSERW KREKQDVVEI LGPSRRSEAL LRQLDDLAYS
1010 1020 1030 1040 1050
DKAKFVERLA ATPEGRRALA EAKDIVSAIE TRFGRADPSD LADQLKRVGP
1060 1070 1080 1090
DQAGDAERIR QVARLADRSH RAELTQQMEL KRSLSRTKSL GLGM
Length:1,094
Mass (Da):120,102
Last modified:May 30, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i9705C75429677C51
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AM236084 Genomic DNA Translation: CAK10446.1

NCBI Reference Sequences

More...
RefSeqi
WP_011654253.1, NC_008381.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CAK10446; CAK10446; pRL100219

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
rle:pRL100219

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM236084 Genomic DNA Translation: CAK10446.1
RefSeqiWP_011654253.1, NC_008381.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiCAK10446; CAK10446; pRL100219
KEGGirle:pRL100219

Phylogenomic databases

HOGENOMiHOG000138087
OMAiLPREMSQ
OrthoDBi961809at2

Family and domain databases

InterProiView protein in InterPro
IPR027351 (+)RNA_virus_helicase_core_dom
IPR041533 Bep_BID
IPR005053 MobA_MobL
IPR027417 P-loop_NTPase
IPR014136 TraA_Ti
PfamiView protein in Pfam
PF17841 Bep_C_terminal, 1 hit
PF03389 MobA_MobL, 1 hit
PF01443 Viral_helicase1, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
TIGRFAMsiTIGR02768 TraA_Ti, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ1M7T3_RHIL3
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q1M7T3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: July 31, 2019
This is version 74 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Technical termi

Complete proteomeImported, PlasmidImported
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