UniProtKB - Q1LXW3 (Q1LXW3_DANRE)
Protein
Submitted name:
Circadian-associated repressor of transcription a
Gene
ciarta
Organism
Danio rerio (Zebrafish) (Brachydanio rerio)
Status
Functioni
GO - Molecular functioni
- RNA polymerase II cis-regulatory region sequence-specific DNA binding Source: GO_Central
GO - Biological processi
- circadian regulation of gene expression Source: GO_Central
- negative regulation of transcription, DNA-templated Source: GO_Central
Names & Taxonomyi
Protein namesi | Submitted name: Circadian-associated repressor of transcription aImported |
Gene namesi | |
Organismi | Danio rerio (Zebrafish) (Brachydanio rerio)Imported |
Taxonomic identifieri | 7955 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Chordata › Craniata › Vertebrata › Euteleostomi › Actinopterygii › Neopterygii › Teleostei › Ostariophysi › Cypriniformes › Danionidae › Danioninae › Danio |
Proteomesi |
|
Organism-specific databases
ZFINi | ZDB-GENE-030131-7016, ciarta |
Expressioni
Gene expression databases
Bgeei | ENSDARG00000058094, Expressed in blastula and 32 other tissues |
Family & Domainsi
Region
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Regioni | 1 – 64 | DisorderedSequence analysisAdd BLAST | 64 | |
Regioni | 207 – 256 | DisorderedSequence analysisAdd BLAST | 50 | |
Regioni | 313 – 358 | DisorderedSequence analysisAdd BLAST | 46 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 1 – 27 | PolarSequence analysisAdd BLAST | 27 | |
Compositional biasi | 233 – 247 | PolarSequence analysisAdd BLAST | 15 | |
Compositional biasi | 313 – 334 | PolarSequence analysisAdd BLAST | 22 | |
Compositional biasi | 337 – 358 | PolyampholyteSequence analysisAdd BLAST | 22 |
Phylogenomic databases
eggNOGi | ENOG502S0BJ, Eukaryota |
GeneTreei | ENSGT00390000018360 |
HOGENOMi | CLU_050541_0_0_1 |
InParanoidi | Q1LXW3 |
OrthoDBi | 929287at2759 |
TreeFami | TF332541 |
Family and domain databases
InterProi | View protein in InterPro IPR031373, Ciart |
PANTHERi | PTHR35441, PTHR35441, 1 hit |
Pfami | View protein in Pfam PF15673, Ciart, 1 hit |
i Sequence
Sequence statusi: Complete.
Q1LXW3-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MLSPGSPSKW QTQDSLSSTP SLMYSESEQT EDESEVFSSE SEAAGVPKPL
60 70 80 90 100
SLANGSSPNS DSRLRFMNQR SNNVVNGQTG PISTPSERIS TEGDLRFARK
110 120 130 140 150
CSELNGYIRP LIELLNGLKT GRYEKGLSSF QQSVAMDRLR RIVGVLQKPD
160 170 180 190 200
LGEKYMGTLL QLEMMLKVWF PQVRPQHRDS THSSLHSLMA NLPPRWNQDQ
210 220 230 240 250
LHIPVKKRRL SWSDSDSQGS SSSKRFLEDD RGSSPSDTSS WLSSSEHTSS
260 270 280 290 300
ELDDDSAICT HTKNKKTSES KLVENAHLLI TEKTISVKET LGTAIGRPPP
310 320 330 340 350
LVIPPAATGG SVLGTQDCSV SSTTPTSDLT DSGNESVKAE GPKKQVIRKS
HRTETLRT
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX248499 Genomic DNA No translation available. CU466434 Genomic DNA No translation available. |
RefSeqi | NP_001314827.1, NM_001327898.1 |
Genome annotation databases
Ensembli | ENSDART00000043507; ENSDARP00000043506; ENSDARG00000058094 |
GeneIDi | 564009 |
KEGGi | dre:564009 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX248499 Genomic DNA No translation available. CU466434 Genomic DNA No translation available. |
RefSeqi | NP_001314827.1, NM_001327898.1 |
3D structure databases
ModBasei | Search... |
SWISS-MODEL-Workspacei | Submit a new modelling project... |
Protein-protein interaction databases
STRINGi | 7955.ENSDARP00000043506 |
Proteomic databases
PaxDbi | Q1LXW3 |
Genome annotation databases
Ensembli | ENSDART00000043507; ENSDARP00000043506; ENSDARG00000058094 |
GeneIDi | 564009 |
KEGGi | dre:564009 |
Organism-specific databases
CTDi | 564009 |
ZFINi | ZDB-GENE-030131-7016, ciarta |
Phylogenomic databases
eggNOGi | ENOG502S0BJ, Eukaryota |
GeneTreei | ENSGT00390000018360 |
HOGENOMi | CLU_050541_0_0_1 |
InParanoidi | Q1LXW3 |
OrthoDBi | 929287at2759 |
TreeFami | TF332541 |
Gene expression databases
Bgeei | ENSDARG00000058094, Expressed in blastula and 32 other tissues |
Family and domain databases
InterProi | View protein in InterPro IPR031373, Ciart |
PANTHERi | PTHR35441, PTHR35441, 1 hit |
Pfami | View protein in Pfam PF15673, Ciart, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | Q1LXW3_DANRE | |
Accessioni | Q1LXW3Primary (citable) accession number: Q1LXW3 | |
Entry historyi | Integrated into UniProtKB/TrEMBL: | May 30, 2006 |
Last sequence update: | March 3, 2009 | |
Last modified: | December 2, 2020 | |
This is version 80 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Unreviewed (UniProtKB/TrEMBL) |