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Protein
Submitted name:

Her6.2

Gene

LOC100049440

Organism
Oryzias latipes (Japanese rice fish) (Japanese killifish)
Status
Unreviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processTranscription, Transcription regulationPROSITE-ProRule annotationSAAS annotation

Names & Taxonomyi

Protein namesi
Submitted name:
Her6.2Imported
Gene namesi
Name:LOC100049440Imported
OrganismiOryzias latipes (Japanese rice fish) (Japanese killifish)Imported
Taxonomic identifieri8090 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiActinopterygiiNeopterygiiTeleosteiNeoteleosteiAcanthomorphataOvalentariaAtherinomorphaeBeloniformesAdrianichthyidaeOryziinaeOryzias
Proteomesi
  • UP000001038 Componenti: Chromosome 17

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusPROSITE-ProRule annotationSAAS annotation

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi8090.ENSORLP00000005762

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini22 – 79BHLHInterPro annotationAdd BLAST58
Domaini98 – 131OrangeInterPro annotationAdd BLAST34

Phylogenomic databases

eggNOGiKOG4304 Eukaryota
ENOG4111F0X LUCA
GeneTreeiENSGT00700000104168
HOGENOMiHOG000236346
HOVERGENiHBG005960
KOiK06054
OMAiLYGGFQV
OrthoDBiEOG091G0GBN
TreeFamiTF351373

Family and domain databases

CDDicd00083 HLH, 1 hit
Gene3Di4.10.280.10, 1 hit
InterProiView protein in InterPro
IPR011598 bHLH_dom
IPR036638 HLH_DNA-bd_sf
IPR003650 Orange_dom
PfamiView protein in Pfam
PF07527 Hairy_orange, 1 hit
PF00010 HLH, 1 hit
SMARTiView protein in SMART
SM00353 HLH, 1 hit
SM00511 ORANGE, 1 hit
SUPFAMiSSF47459 SSF47459, 1 hit
PROSITEiView protein in PROSITE
PS50888 BHLH, 1 hit
PS51054 ORANGE, 1 hit

Sequencei

Sequence statusi: Complete.

Q1L7T3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MPTGPLERPA GAPEKVRASS ESRKSSKPIM EKRRRARINE SLAQLKSLIL
60 70 80 90 100
DALKKDSCRH SKLEKADILE MTVKHLRNLQ RLHVSAAVHS DPSVLSKYRA
110 120 130 140 150
GFSECVGEVT RFLSSYEGVN SEARTRLLSH LASCVSQIHT VNVCGPHPGA
160 170 180 190 200
PGQSAALLPA ASGPQTTKSC SQMPASTDTI TLFAGFQVVP SPDGQFSLLV
210 220 230
PSAGLTPLGM HSGGAPAAAP ALTSDSVWRP W
Length:231
Mass (Da):24,582
Last modified:May 30, 2006 - v1
Checksum:i8A2FABFB1FB0E6BB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BAAF04069001 Genomic DNA No translation available.
DQ002915 mRNA Translation: AAY45952.1
RefSeqiNP_001098284.1, NM_001104814.1
UniGeneiOla.12263

Genome annotation databases

EnsembliENSORLT00000005763; ENSORLP00000005762; ENSORLG00000004584
GeneIDi100049440
KEGGiola:100049440

Similar proteinsi

Entry informationi

Entry nameiQ1L7T3_ORYLA
AccessioniPrimary (citable) accession number: Q1L7T3
Entry historyiIntegrated into UniProtKB/TrEMBL: May 30, 2006
Last sequence update: May 30, 2006
Last modified: May 23, 2018
This is version 96 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported

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