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Entry version 79 (31 Jul 2019)
Sequence version 1 (13 Jun 2006)
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Protein
Submitted name:

Glycosyl hydrolase family 98, putative carbohydrate binding module

Gene

Dgeo_2666

Organism
Deinococcus geothermalis (strain DSM 11300)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHydrolaseImported

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

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BioCyci
DGEO319795:GHMU-2733-MONOMER

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
CBM51 Carbohydrate-Binding Module Family 51
CBM57 Carbohydrate-Binding Module Family 57

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Glycosyl hydrolase family 98, putative carbohydrate binding moduleImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:Dgeo_2666Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid pDGEO01Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiDeinococcus geothermalis (strain DSM 11300)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri319795 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaDeinococcus-ThermusDeinococciDeinococcalesDeinococcaceaeDeinococcus
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002431 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Plasmid pDGEO01

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 27Sequence analysisAdd BLAST27
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_500419223728 – 970Sequence analysisAdd BLAST943

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
319795.Dgeo_2666

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini387 – 481Fibronectin type-IIIInterPro annotationAdd BLAST95

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni27 – 58DisorderedSequence analysisAdd BLAST32
Regioni382 – 401DisorderedSequence analysisAdd BLAST20

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

Database of Orthologous Groups

More...
OrthoDBi
830437at2

Family and domain databases

Conserved Domains Database

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CDDi
cd00063 FN3, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
2.60.120.1060, 2 hits
2.60.40.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR008979 Galactose-bd-like_sf
IPR013222 Glyco_hyd_98_carb-bd
IPR013783 Ig-like_fold
IPR021720 Malectin_dom
IPR039155 MLEC
IPR038637 NPCBM_sf

The PANTHER Classification System

More...
PANTHERi
PTHR13460 PTHR13460, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF11721 Malectin, 1 hit
PF08305 NPCBM, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00776 NPCBM, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF49265 SSF49265, 1 hit
SSF49785 SSF49785, 3 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50853 FN3, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q1J335-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKKTTPWQSR ATLLLALSLS LAACSQAPSP ETSANDPYAG GVSYPWTDQT
60 70 80 90 100
PTPADPYASG ISYPWTGPSA ASLQPAGLSG DNSLSDLSWT PGSAANAWGP
110 120 130 140 150
IELNRSNGEK NAGDGRTLTI GGQSFPKGLG MHANGEVSYA TGGSCSTFTA
160 170 180 190 200
TVGIDDEVGD RGSVVFEVWD GTTTRLYATP ILRGSDPPFN LTVPLTRPDG
210 220 230 240 250
SAVRDLRLVV RDAGDGISYD HADWANPTLS CSATPPSGDV FVSDLDWNTP
260 270 280 290 300
SNGWGPIEQD LSNGEKGLAD GRTLTIGGQS FPKGLGMHAN GSVTYLLGGR
310 320 330 340 350
CSTFTASVGV DDEVGDRGSV VFQVFGDGTK LYDSGVRRGT DGPQALNVNV
360 370 380 390 400
SGVQQLKLVV TDAGDSISYD HADWANAKLS CSSDTTPPAT PSGLTATGTP
410 420 430 440 450
DGITLDWSDN SEADLAGYKV YGSASPNGPF QLLTPQPIQQ SAWTDTSVPP
460 470 480 490 500
GATEYYQVVA VDSSGNASAP ASVSATRLSG STAAKIEIEN LDGTPWNDRL
510 520 530 540 550
VFSRIGSLAS PPSNGVHNLV TLRVKNTGAA TLRISSLPIQ DTWTLDPAIT
560 570 580 590 600
LPLDIPPGGS ADLRLRFVAE TTKAHFGTLT INSNDPATPS LAVQLAGLWQ
610 620 630 640 650
SQSENNQEPS TLQIRDAFGF KNSLLGGEAS LNQKGLVRAQ GDEVLSPYWQ
660 670 680 690 700
RADETQPVVV RQLAAYHTQG NTATLNWHAK GSNTLNTVFT HAGIDGQTVL
710 720 730 740 750
PRLNGSSTQL AYKAFTPTAK TFGFNVDSSE WSDPTKNRQG PDLTAGCSGP
760 770 780 790 800
CGQHIRFYTV RDRAGVLIPN TYFVIMDYSG INYDYNDNIY LISNIKPAPI
810 820 830 840 850
LINVGGPAFT DPDGNVWTAD KYSYTDQNGA QRTYTYYTPS NAISQPSSPT
860 870 880 890 900
SVDILNTTND VLYRTYRHNT LDTPLDSRVM IFDIPVNNGT YQVKLHFAEL
910 920 930 940 950
YWNEPGKRLF DVSVEGVPKL TNFDIWAQAG GKNTALVVPI NNVQVADGRL
960 970
TIQLKARVDF PDLSGIEVTR
Length:970
Mass (Da):103,181
Last modified:June 13, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iB28D3A572690ED69
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP000358 Genomic DNA Translation: ABF44099.1

NCBI Reference Sequences

More...
RefSeqi
WP_011525904.1, NC_008010.2

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ABF44099; ABF44099; Dgeo_2666

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
dge:Dgeo_2666

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000358 Genomic DNA Translation: ABF44099.1
RefSeqiWP_011525904.1, NC_008010.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi319795.Dgeo_2666

Protein family/group databases

CAZyiCBM51 Carbohydrate-Binding Module Family 51
CBM57 Carbohydrate-Binding Module Family 57

Genome annotation databases

EnsemblBacteriaiABF44099; ABF44099; Dgeo_2666
KEGGidge:Dgeo_2666

Phylogenomic databases

OrthoDBi830437at2

Enzyme and pathway databases

BioCyciDGEO319795:GHMU-2733-MONOMER

Family and domain databases

CDDicd00063 FN3, 1 hit
Gene3Di2.60.120.1060, 2 hits
2.60.40.10, 2 hits
InterProiView protein in InterPro
IPR003961 FN3_dom
IPR036116 FN3_sf
IPR008979 Galactose-bd-like_sf
IPR013222 Glyco_hyd_98_carb-bd
IPR013783 Ig-like_fold
IPR021720 Malectin_dom
IPR039155 MLEC
IPR038637 NPCBM_sf
PANTHERiPTHR13460 PTHR13460, 1 hit
PfamiView protein in Pfam
PF11721 Malectin, 1 hit
PF08305 NPCBM, 2 hits
SMARTiView protein in SMART
SM00776 NPCBM, 2 hits
SUPFAMiSSF49265 SSF49265, 1 hit
SSF49785 SSF49785, 3 hits
PROSITEiView protein in PROSITE
PS50853 FN3, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ1J335_DEIGD
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q1J335
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 13, 2006
Last sequence update: June 13, 2006
Last modified: July 31, 2019
This is version 79 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, PlasmidImported, Reference proteomeImported
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