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Entry version 81 (02 Jun 2021)
Sequence version 1 (13 Jun 2006)
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Protein

YcaO domain-containing protein

Gene

PSEEN3294

Organism
Pseudomonas entomophila (strain L48)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
YcaO domain-containing proteinInterPro annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:PSEEN3294Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiPseudomonas entomophila (strain L48)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri384676 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaPseudomonadalesPseudomonadaceaePseudomonas
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000658 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
384676.PSEEN3294

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini204 – 572YcaOInterPro annotationAdd BLAST369

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
COG1765, Bacteria
COG1944, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_022530_1_0_6

Identification of Orthologs from Complete Genome Data

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OMAi
EFVEWDF

Database of Orthologous Groups

More...
OrthoDBi
1068793at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.300.20, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR015946, KH_dom-like_a/b
IPR003718, OsmC/Ohr_fam
IPR036102, OsmC/Ohrsf
IPR003776, YcaO-like_dom
IPR041080, YcaO_C
IPR019938, YcaO_dom_prot

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02566, OsmC, 1 hit
PF02624, YcaO, 1 hit
PF18381, YcaO_C, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF82784, SSF82784, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00702, TIGR00702, 1 hit
TIGR03549, TIGR03549, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51664, YCAO, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q1I8H9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEIKVNFLDN LRLEAKFDDF TVIADQPIRY KGDGSAPGPF DYFLASSALC
60 70 80 90 100
AAYFVKLYCQ TRDIPTENIR LSQNNIVDPE NRYNQIFKIQ VELPEDISEK
110 120 130 140 150
DRQGILRSID RCTVKKVVQT GPEFIIEEVD NLDADAQALL MPVSDSTTYI
160 170 180 190 200
PGKDLPLEQT IANMSAILAG LGMKIEIASW RNIVPNVWSL HVRDAQSPMC
210 220 230 240 250
FTNGKGATKE AALASALGEF IERLNCNFFY NDQFWGEDIA NAPFVHYPNE
260 270 280 290 300
QWFKPGPKDA LPAEILDEYC LEIFNPDGEL RGSHLYDTNS GNKERGICSL
310 320 330 340 350
PFVRQSDGET VYFPSNLIEN LYLSNGMSAG NTLAEAQVQC LSEIFERAVK
360 370 380 390 400
REILEGELCL PDVPQAVLAK YPGIVAGIQG LEEQGFPVLV KDASLGGEFP
410 420 430 440 450
VMCVTLMNPR TGGVFASFGA HPSFEVALER SLTELLQGRS FEGLNDLPQP
460 470 480 490 500
TFESHAVTEP NNFVEHFIDS SGVVSWRFFS AKADFEFVEW DFSGHGEDSN
510 520 530 540 550
QQEAQTLFGI LEDLGKEVYM AVYDDLGATA CRILVPGYSE IYPVEDLIWD
560 570 580 590 600
NTNRALGFRA DILNLHQLDN RSLKLLLKRL DNAEVDDYTT ITTLIGVEFD
610 620 630 640 650
DNTVWGQLTI LELKLLIHLV LQRFEDAKEL VEMFLQFNDN TVERGLFYQA
660 670 680 690 700
LNVVLEVVLD DELEMADYEA NFRRMFGNER MDAVLGSVDG SVRFHGLTPT
710 720 730
SMKLEGLDRH LRLVESYKKL HAARARAAGV AG
Length:732
Mass (Da):82,049
Last modified:June 13, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4B5C5AA916A4C78A
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CT573326 Genomic DNA Translation: CAK16049.1

NCBI Reference Sequences

More...
RefSeqi
WP_011534436.1, NC_008027.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
CAK16049; CAK16049; PSEEN3294

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
pen:PSEEN3294

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CT573326 Genomic DNA Translation: CAK16049.1
RefSeqiWP_011534436.1, NC_008027.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi384676.PSEEN3294

Genome annotation databases

EnsemblBacteriaiCAK16049; CAK16049; PSEEN3294
KEGGipen:PSEEN3294

Phylogenomic databases

eggNOGiCOG1765, Bacteria
COG1944, Bacteria
HOGENOMiCLU_022530_1_0_6
OMAiEFVEWDF
OrthoDBi1068793at2

Family and domain databases

Gene3Di3.30.300.20, 1 hit
InterProiView protein in InterPro
IPR015946, KH_dom-like_a/b
IPR003718, OsmC/Ohr_fam
IPR036102, OsmC/Ohrsf
IPR003776, YcaO-like_dom
IPR041080, YcaO_C
IPR019938, YcaO_dom_prot
PfamiView protein in Pfam
PF02566, OsmC, 1 hit
PF02624, YcaO, 1 hit
PF18381, YcaO_C, 1 hit
SUPFAMiSSF82784, SSF82784, 1 hit
TIGRFAMsiTIGR00702, TIGR00702, 1 hit
TIGR03549, TIGR03549, 1 hit
PROSITEiView protein in PROSITE
PS51664, YCAO, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ1I8H9_PSEE4
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q1I8H9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: June 13, 2006
Last sequence update: June 13, 2006
Last modified: June 2, 2021
This is version 81 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)
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