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UniProtKB - Q1I0U9 (CAPSD_MPRVN)

Entry version 28 (12 Aug 2020)
Sequence version 1 (13 Jun 2006)
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Protein

Major inner capsid protein VP3

Gene

S3

Organism
Micromonas pusilla reovirus (isolate Netherlands/2005) (MpRV)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Self-assembles to form an icosahedral capsid with a pseudo T=2 symmetry, about 60 nm in diameter, and consisting of 120 VP3 subunits. The capsid encapsulates the genomic RNA (By similarity).By similarity

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Major inner capsid protein VP3
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:S3
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMicromonas pusilla reovirus (isolate Netherlands/2005) (MpRV)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri649596 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiViruses › Riboviria › Orthornavirae › Duplornaviricota › Resentoviricetes › Reovirales › Reoviridae › Sedoreovirinae › Mimoreovirus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiMicromonas pusilla (Picoplanktonic green alga) (Chromulina pusilla) [TaxID: 38833]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000349 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Cellular componenti

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Capsid protein, Inner capsid protein, T=2 icosahedral capsid protein, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00004041571 – 1026Major inner capsid protein VP3Add BLAST1026

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		Q1I0U9

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q1I0U9

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi108 – 113Poly-Asp6
Compositional biasi456 – 459Poly-Ala4

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q1I0U9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MSNTMPEGYI PRPGKDQTLE AYISEELSKH NLTFNDVLNN EEMMAELSKD 
        60         70         80         90        100
DAFMKLKAEF ENKDKPEVVE ASSNKKEEKV SEPKVEEKKD PEPEKDAPAL 
       110        120        130        140        150
VVEEVVMDDD DADEVEKPTM EAPKSTVAKL TETQFRIDSS NLMSKIDFTI 
       160        170        180        190        200
AYDKLMTVDS FGVEDLVTKS PFYATRLDKP RHMRMDEFCN EFIEPAIPSA 
       210        220        230        240        250
LGHPNSEGYT DMVGFDWEKN QYLNLYEELG RRSVEAIELD DDANAGDVII 
       260        270        280        290        300
GGVTSLSMIK QVNAIVHDAI LPKGRLAYIM AQMRAARCLQ FTRVANGQEA 
       310        320        330        340        350
TPEDKLQAYM DAYMNPTYTR ALRIRTPEPR VVTYNKAIDY VMYRLTLNAD 
       360        370        380        390        400
NDFISPMVQI SDSIDVGRGV RSRSYQAATT VMSVIASSHR NLERPMTSAR 
       410        420        430        440        450
APAKVITAFT DLVAPPAAEA MQKLGSYCLG GRRAELTVDM TDPILQSTDS 
       460        470        480        490        500
VLAPIAAAAN LILLDTNRLG NDIKRTLVYR MLSPFYGTGT RAEVDRINFN 
       510        520        530        540        550
NIPRIVLTPI PDRRGLHGRL ANFIRRQLTK PAYGRMDRND SRIWRADIQT 
       560        570        580        590        600
TPMLPFVPAG GMTPLSMHIG DERLENQAYA PQANELKVSL MDFVKMFDLM 
       610        620        630        640        650
HARQGKETYL SSQFSAILTN ESSYLYNSIS MVMRTMIRGW ESLDLLPPLD 
       660        670        680        690        700
GAVPGALEMD RTEAFVLPFT GAVSFICYGI EDDGLEYVPW EQRKEIPMPS 
       710        720        730        740        750
SFPMLLDMEI RVANELLLEA ADPAGRFTRS DMLINQDEFI NMAEFIMKKY 
       760        770        780        790        800
LTSIDGGEFG TRYRLHWYLF EGIRIHNRTL QTPGIEDLKV ARRILDGVKY 
       810        820        830        840        850
PEDIATAVYI KIYESVNPID LVNPDPQRSD YQVYMEEIPA DDEILEIKDI 
       860        870        880        890        900
VTYRREDGGE DFNFTPYLHS GETFNLDLIR KLAKSIPGDH RYVKVPTKVT 
       910        920        930        940        950
VKPVELLDNV DVIAEDFTVA LKFKKGVNEM RFEASDIPLY YRWDKFNGRS 
       960        970        980        990       1000
QLTLDVRVFP DTNVLLDHVM ESDPRMGYAP QVLNDGTVGW VSTLSGNVYL 
      1010       1020 
EERKVCRREE EVLKSGIDLL IDPYGV
Length:1,026
Mass (Da):116,266
Last modified:June 13, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iC629E1B133D7612D
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
DQ126103 Genomic RNA Translation: AAZ94043.1

NCBI Reference Sequences

More...RefSeqi		YP_654546.1, NC_008173.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...GeneIDi		5076665

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		vg:5076665

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ126103 Genomic RNA Translation: AAZ94043.1
RefSeqiYP_654546.1, NC_008173.1

3D structure databases

SMRiQ1I0U9
ModBaseiSearch...

Proteomic databases

PRIDEiQ1I0U9

Genome annotation databases

GeneIDi5076665
KEGGivg:5076665

Family and domain databases

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiCAPSD_MPRVN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q1I0U9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 8, 2011
Last sequence update: June 13, 2006
Last modified: August 12, 2020
This is version 28 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome
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