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Protein

40S ribosomal protein S23

Gene

rps-23

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-CEL-72702 Ribosomal scanning and start codon recognition
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S23
Gene namesi
Name:rps-23
ORF Names:F28D1.7
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiF28D1.7a ; CE05747 ; WBGene00004492 ; rps-23

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasm, Endoplasmic reticulum

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001464701 – 14340S ribosomal protein S23Add BLAST143

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei62HydroxyprolineBy similarity1

Keywords - PTMi

Hydroxylation

Proteomic databases

EPDiQ19877
PaxDbiQ19877
PeptideAtlasiQ19877
PRIDEiQ19877

Expressioni

Gene expression databases

BgeeiWBGene00004492

Interactioni

Subunit structurei

Component of the 40S small ribosomal subunit.By similarity

Protein-protein interaction databases

BioGridi43281, 1 interactor
DIPiDIP-27207N
STRINGi6239.F28D1.7.3

Structurei

3D structure databases

ProteinModelPortaliQ19877
SMRiQ19877
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG1749 Eukaryota
COG0048 LUCA
GeneTreeiENSGT00550000074784
HOGENOMiHOG000040064
InParanoidiQ19877
KOiK02973
OMAiKFRWSQR
OrthoDBiEOG091G0R2G
PhylomeDBiQ19877

Family and domain databases

CDDicd03367 Ribosomal_S23, 1 hit
InterProiView protein in InterPro
IPR012340 NA-bd_OB-fold
IPR006032 Ribosomal_S12/S23
IPR005680 Ribosomal_S23_euk/arc
PANTHERiPTHR11652 PTHR11652, 1 hit
PfamiView protein in Pfam
PF00164 Ribosom_S12_S23, 1 hit
PIRSFiPIRSF002133 Ribosomal_S12/S23, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
TIGRFAMsiTIGR00982 uS12_E_A, 1 hit
PROSITEiView protein in PROSITE
PS00055 RIBOSOMAL_S12, 1 hit

Sequencei

Sequence statusi: Complete.

Q19877-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGKPKGLCTA RKLKTHRQEQ RWNDKRYKKA HIGTRWKSNP FGGASHAKGI
60 70 80 90 100
VLEKIGVEAK QPNSAIRKCV RVQLIKNGKK ITAFVPNDGC LNFVEENDEV
110 120 130 140
LVSGFGRSGH AVGDIPGVRF KIVKVANTSL IALFKGKKER PRS
Length:143
Mass (Da):15,875
Last modified:November 1, 1996 - v1
Checksum:i04DE9FDAE682AF5E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z70684 Genomic DNA Translation: CAA94601.1
PIRiT21497
RefSeqiNP_502365.1, NM_069964.5
UniGeneiCel.7839

Genome annotation databases

EnsemblMetazoaiF28D1.7a.1; F28D1.7a.1; WBGene00004492
F28D1.7a.2; F28D1.7a.2; WBGene00004492
GeneIDi178188
KEGGicel:CELE_F28D1.7
UCSCiF28D1.7.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRS23_CAEEL
AccessioniPrimary (citable) accession number: Q19877
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1996
Last modified: May 23, 2018
This is version 126 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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