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Protein
Submitted name:

Small Nuclear RibonucleoProtein homolog

Gene

snrp-40.1

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Keywordsi

Molecular functionRibonucleoproteinImported, Viral nucleoproteinImported

Enzyme and pathway databases

ReactomeiR-CEL-72163 mRNA Splicing - Major Pathway
R-CEL-72165 mRNA Splicing - Minor Pathway
SignaLinkiQ19211

Names & Taxonomyi

Protein namesi
Submitted name:
Small Nuclear RibonucleoProtein homologImported
Gene namesi
Name:snrp-40.1Imported
ORF Names:CELE_F08G12.2Imported, F08G12.2Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome X

Organism-specific databases

WormBaseiF08G12.2 ; CE18578 ; WBGene00008586 ; snrp-40.1

Subcellular locationi

    Keywords - Cellular componenti

    Virion

    PTM / Processingi

    Proteomic databases

    EPDiQ19211
    PaxDbiQ19211
    PeptideAtlasiQ19211

    Expressioni

    Gene expression databases

    BgeeiWBGene00008586

    Interactioni

    Protein-protein interaction databases

    DIPiDIP-25377N
    IntActiQ19211, 4 interactors
    STRINGi6239.F08G12.2

    Structurei

    3D structure databases

    ProteinModelPortaliQ19211
    ModBaseiSearch...
    MobiDBiSearch...

    Family & Domainsi

    Domains and Repeats

    Feature keyPosition(s)DescriptionActionsGraphical viewLength
    Domaini34 – 331WD_REPEATS_REGIONInterPro annotationAdd BLAST298
    Repeati34 – 67WDPROSITE-ProRule annotationAdd BLAST34
    Repeati77 – 118WDPROSITE-ProRule annotationAdd BLAST42
    Repeati169 – 202WDPROSITE-ProRule annotationAdd BLAST34
    Repeati203 – 237WDPROSITE-ProRule annotationAdd BLAST35
    Repeati295 – 331WDPROSITE-ProRule annotationAdd BLAST37

    Keywords - Domaini

    WD repeatPROSITE-ProRule annotation

    Phylogenomic databases

    eggNOGiKOG0265 Eukaryota
    ENOG410XSEW LUCA
    GeneTreeiENSGT00810000125363
    HOGENOMiHOG000091644
    InParanoidiQ19211
    KOiK12857
    OMAiGDCENYG
    OrthoDBiEOG091G0DR4
    PhylomeDBiQ19211

    Family and domain databases

    Gene3Di2.130.10.10, 1 hit
    InterProiView protein in InterPro
    IPR020472 G-protein_beta_WD-40_rep
    IPR015943 WD40/YVTN_repeat-like_dom_sf
    IPR001680 WD40_repeat
    IPR019775 WD40_repeat_CS
    IPR017986 WD40_repeat_dom
    IPR036322 WD40_repeat_dom_sf
    PfamiView protein in Pfam
    PF00400 WD40, 7 hits
    PRINTSiPR00320 GPROTEINBRPT
    SMARTiView protein in SMART
    SM00320 WD40, 7 hits
    SUPFAMiSSF50978 SSF50978, 1 hit
    PROSITEiView protein in PROSITE
    PS00678 WD_REPEATS_1, 4 hits
    PS50082 WD_REPEATS_2, 5 hits
    PS50294 WD_REPEATS_REGION, 1 hit

    Sequencei

    Sequence statusi: Complete.

    Q19211-1 [UniParc]FASTAAdd to basket

    « Hide

            10         20         30         40         50
    MALVTSSGQQ LVSSGFPQQT AQRFSNLMAP TMVLLGHEGE IYTGAFSPDG
    60 70 80 90 100
    TCLATSGYDQ KIFFWNVYGE CENFSTIKGH SGAVMDLKFT TDSSSLVSCG
    110 120 130 140 150
    TDKSVRVWDM ETGTCARRFR THTDFVNAVH PSRRGVTLVA SASDDGTCRV
    160 170 180 190 200
    HDMRTKEPVK TYTNRYQQTA VTFNDSSDQV ISGGIDNVLK VWDMRRDEIT
    210 220 230 240 250
    YTLTGHRDTI TGISLSPSGK FIISNSMDCT VRQWDIRPFV PGQRSVGVFA
    260 270 280 290 300
    GHNHNFEKNL LKCSWSPCER FITAGSSDRF LYVWETLSKK IVYKLPGHMG
    310 320 330
    SVNCTDFHPK EPIMLSCGSD KRVFLGEIDM S
    Length:331
    Mass (Da):36,822
    Last modified:November 1, 1998 - v2
    Checksum:iE537B19EC9180F91
    GO

    Sequence databases

    Select the link destinations:
    EMBLi
    GenBanki
    DDBJi
    Links Updated
    BX284606 Genomic DNA Translation: CAA91460.1
    PIRiT20593
    RefSeqiNP_509886.1, NM_077485.5
    UniGeneiCel.11041

    Genome annotation databases

    EnsemblMetazoaiF08G12.2; F08G12.2; WBGene00008586
    GeneIDi181319
    KEGGicel:CELE_F08G12.2
    UCSCiF08G12.2 c. elegans

    Similar proteinsi

    Entry informationi

    Entry nameiQ19211_CAEEL
    AccessioniPrimary (citable) accession number: Q19211
    Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
    Last sequence update: November 1, 1998
    Last modified: July 18, 2018
    This is version 152 of the entry and version 2 of the sequence. See complete history.
    Entry statusiUnreviewed (UniProtKB/TrEMBL)

    Miscellaneousi

    Keywords - Technical termi

    Complete proteome, Proteomics identificationCombined sources, Reference proteomeImported

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