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Protein

50S ribosomal protein L4

Gene

rpl4

Organism
Haloquadratum walsbyi (strain DSM 16790 / HBSQ001)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

One of the primary rRNA binding proteins, this protein initially binds near the 5'-end of the 23S rRNA. It is important during the early stages of 50S assembly. It makes multiple contacts with different domains of the 23S rRNA in the assembled 50S subunit and ribosome.UniRule annotation
Forms part of the polypeptide exit tunnel.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein, RNA-binding, rRNA-binding

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L4UniRule annotation
Gene namesi
Name:rpl4UniRule annotation
Ordered Locus Names:HQ_2841A
OrganismiHaloquadratum walsbyi (strain DSM 16790 / HBSQ001)
Taxonomic identifieri362976 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaStenosarchaea groupHalobacteriaHaloferacalesHaloferacaceaeHaloquadratum
Proteomesi
  • UP000001975 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000524131 – 24850S ribosomal protein L4Add BLAST248

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi362976.HQ2841A

Structurei

3D structure databases

ProteinModelPortaliQ18GF0
SMRiQ18GF0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL4 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04071 Archaea
COG0088 LUCA
HOGENOMiHOG000107332
KOiK02930
OMAiGRGKMRN
OrthoDBiPOG093Z07B4

Family and domain databases

Gene3Di3.40.1370.10, 1 hit
HAMAPiMF_01328_A Ribosomal_L4_A, 1 hit
InterProiView protein in InterPro
IPR002136 Ribosomal_L4/L1e
IPR023574 Ribosomal_L4_dom_sf
IPR019970 Ribosomall_L4
PfamiView protein in Pfam
PF00573 Ribosomal_L4, 1 hit
SUPFAMiSSF52166 SSF52166, 1 hit
TIGRFAMsiTIGR03672 rpl4p_arch, 1 hit

Sequencei

Sequence statusi: Complete.

Q18GF0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
METTIHNLNG DKADTLELPA VFETPYRPDV IERAVVAAQA NRKQPYGADP
60 70 80 90 100
YAGMRTPAES FGSGRGMAHV PRENGQARRV PQAVSGRKAH PPKAEKDQSK
110 120 130 140 150
SVNTKERKLA FQSAVAATAD PSQVEERGHQ FENDVELPLV VSDEFEELIK
160 170 180 190 200
TQEVVDVLES LGVHADIVRS DENKSIRAGR GKTRGRKYRR PKSILFITSD
210 220 230 240
EPSKAARNLA GADVVTAANV SAEDLAPGTQ PGRLTVYTES AIKEVADR
Length:248
Mass (Da):27,009
Last modified:July 25, 2006 - v1
Checksum:i5E5D0F34B9FE87FB
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180088 Genomic DNA Translation: CAJ52948.1
RefSeqiWP_011572061.1, NC_008212.1

Genome annotation databases

EnsemblBacteriaiCAJ52948; CAJ52948; HQ_2841A
GeneIDi4194626
KEGGihwa:HQ_2841A

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AM180088 Genomic DNA Translation: CAJ52948.1
RefSeqiWP_011572061.1, NC_008212.1

3D structure databases

ProteinModelPortaliQ18GF0
SMRiQ18GF0
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi362976.HQ2841A

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiCAJ52948; CAJ52948; HQ_2841A
GeneIDi4194626
KEGGihwa:HQ_2841A

Phylogenomic databases

eggNOGiarCOG04071 Archaea
COG0088 LUCA
HOGENOMiHOG000107332
KOiK02930
OMAiGRGKMRN
OrthoDBiPOG093Z07B4

Family and domain databases

Gene3Di3.40.1370.10, 1 hit
HAMAPiMF_01328_A Ribosomal_L4_A, 1 hit
InterProiView protein in InterPro
IPR002136 Ribosomal_L4/L1e
IPR023574 Ribosomal_L4_dom_sf
IPR019970 Ribosomall_L4
PfamiView protein in Pfam
PF00573 Ribosomal_L4, 1 hit
SUPFAMiSSF52166 SSF52166, 1 hit
TIGRFAMsiTIGR03672 rpl4p_arch, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiRL4_HALWD
AccessioniPrimary (citable) accession number: Q18GF0
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: July 25, 2006
Last modified: October 10, 2018
This is version 80 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families
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Main funding by: National Institutes of Health

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