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Protein
Submitted name:

COLlagen

Gene

col-125

Organism
Caenorhabditis elegans
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

Names & Taxonomyi

Protein namesi
Submitted name:
COLlagenImported
Gene namesi
Name:col-125Imported
ORF Names:C29F4.1Imported, CELE_C29F4.1Imported
OrganismiCaenorhabditis elegansImported
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome IV

Organism-specific databases

WormBaseiC29F4.1 ; CE03038 ; WBGene00000699 ; col-125

Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei12 – 36HelicalSequence analysisAdd BLAST25

Keywords - Cellular componenti

Membrane

PTM / Processingi

Proteomic databases

EPDiQ18302
PaxDbiQ18302
PeptideAtlasiQ18302

Expressioni

Gene expression databases

BgeeiWBGene00000699 Expressed in 5 organ(s), highest expression level in material anatomical entity

Interactioni

Protein-protein interaction databases

DIPiDIP-24992N
IntActiQ18302, 1 interactor
STRINGi6239.C29F4.1

Structurei

3D structure databases

ProteinModelPortaliQ18302
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini12 – 64Col_cuticle_NInterPro annotationAdd BLAST53

Keywords - Domaini

CollagenImported, Transmembrane, Transmembrane helixSequence analysis

Phylogenomic databases

eggNOGiENOG410IS6M Eukaryota
ENOG410YHSS LUCA
GeneTreeiENSGT00690000102313
HOGENOMiHOG000085656
InParanoidiQ18302
OMAiHAEINFC
OrthoDBiEOG091G16F9

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
IPR008160 Collagen
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
PF01391 Collagen, 2 hits
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit

Sequencei

Sequence statusi: Complete.

Q18302-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDLEQRIKAY RFVAYSAVAF SVVAVISVCV TLPMVYNYVH HVKRTMHSEI
60 70 80 90 100
NFCKGSAKDI WSEVNQLKSI PSGNRTARQA GYDAGVTGGA ASAGGCDACC
110 120 130 140 150
LPGAAGPAGT PGKPGRPGKP GAPGLPGNPG RPPQQPCEPI TPPPCKPCPA
160 170 180 190 200
GPAGAPGPAG PAGDAGANGN PGAPGQDGQP GAPGNKGPSG PNGNPGAPGA
210 220 230 240 250
PGQPGQDAPS EPITPGAPGP AGPAGPQGQP GAPGQPGHDG QPGAPGPKGP
260 270 280 290
NGNPGAPGAD GNPGAPGQAG TAGGAGEKGI CPKYCAIDGG VFFEDGTRR
Length:299
Mass (Da):28,680
Last modified:November 1, 1996 - v1
Checksum:i3359443F45BB565C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CAA92729.1
PIRiT19564
RefSeqiNP_502107.1, NM_069706.5
UniGeneiCel.23437

Genome annotation databases

EnsemblMetazoaiC29F4.1; C29F4.1; WBGene00000699
GeneIDi178029
KEGGicel:CELE_C29F4.1
UCSCiC29F4.1 c. elegans

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284604 Genomic DNA Translation: CAA92729.1
PIRiT19564
RefSeqiNP_502107.1, NM_069706.5
UniGeneiCel.23437

3D structure databases

ProteinModelPortaliQ18302
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

DIPiDIP-24992N
IntActiQ18302, 1 interactor
STRINGi6239.C29F4.1

Proteomic databases

EPDiQ18302
PaxDbiQ18302
PeptideAtlasiQ18302

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC29F4.1; C29F4.1; WBGene00000699
GeneIDi178029
KEGGicel:CELE_C29F4.1
UCSCiC29F4.1 c. elegans

Organism-specific databases

CTDi178029
WormBaseiC29F4.1 ; CE03038 ; WBGene00000699 ; col-125

Phylogenomic databases

eggNOGiENOG410IS6M Eukaryota
ENOG410YHSS LUCA
GeneTreeiENSGT00690000102313
HOGENOMiHOG000085656
InParanoidiQ18302
OMAiHAEINFC
OrthoDBiEOG091G16F9

Gene expression databases

BgeeiWBGene00000699 Expressed in 5 organ(s), highest expression level in material anatomical entity

Family and domain databases

InterProiView protein in InterPro
IPR002486 Col_cuticle_N
IPR008160 Collagen
PfamiView protein in Pfam
PF01484 Col_cuticle_N, 1 hit
PF01391 Collagen, 2 hits
SMARTiView protein in SMART
SM01088 Col_cuticle_N, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ18302_CAEEL
AccessioniPrimary (citable) accession number: Q18302
Entry historyiIntegrated into UniProtKB/TrEMBL: November 1, 1996
Last sequence update: November 1, 1996
Last modified: September 12, 2018
This is version 120 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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