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Entry version 74 (02 Jun 2021)
Sequence version 2 (05 May 2009)
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Protein

Protein BREVIS RADIX

Gene

BRX

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Acts as a regulator of cell proliferation and elongation in the root and shoot (PubMed:25049386, PubMed:28652362).

Regulates roots architecture and primary root protophloem differentiation (PubMed:25049386, PubMed:28652362).

BRX, BAM3, and CLE45 act together to regulate the transition of protophloem cells from proliferation to differentiation, thus impinging on postembryonic growth capacity of the root meristem (PubMed:23569225).

Probable transcription regulator. Regulated by the auxin response factor ARF5. Polarly localized in vascular cells and subject to endocytic recycling. Required for CPD expression and for correct nuclear auxin response. Mediates cross-talk between the auxin and brassinosteroid pathways. BRX is a target for auxin-induced, proteasome-mediated degradation.

8 Publications

Miscellaneous

The truncated variant in cv. Uk-1 results in short root phenotype.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionDevelopmental protein
Biological processDifferentiation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein BREVIS RADIX1 Publication
Short name:
AtBRX1 Publication
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:BRX1 Publication
Ordered Locus Names:At1g31880Imported
ORF Names:F5M6.11Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT1G31880

The Arabidopsis Information Resource

More...
TAIRi
locus:2034486, AT1G31880

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Cell membrane, Membrane, Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section describes the in vivo effects caused by ablation of the gene (or one or more transcripts) coding for the protein described in the entry. This includes gene knockout and knockdown, provided experiments have been performed in the context of a whole organism or a specific tissue, and not at the single-cell level.<p><a href='/help/disruption_phenotype' target='_top'>More...</a></p>Disruption phenotypei

Impaired primary root protophloem differentiation. Short primary root and increased number of lateral roots (PubMed:25049386, PubMed:28652362). Absent sieve element precursor division, occurrence of gap cells lacking actin filament, associated with a reduction in the number of early dividing protophloem cells, in root meristem size and root growth; these phenotypes are partially rescued in plants also missing MAKR5 (PubMed:25049386, PubMed:28652362, PubMed:27354416). Patchy expression of SUC2 (PubMed:25049386). Reduced cotyledon and leaf size. Enhanced response to abscisic acid-mediated inhibition of root growth and insensitivity to cytokinin induced inhibition of lateral root initiation. The double mutant brx ops double mutant has strongly reduced root length and meristem size, with missing protophloem strands (PubMed:28652362). The disruption of BAM3 restores root protophloem and mersitem phenotypes observed in brx mutants (PubMed:23569225). Ectopic overexpression of BAM3 but slightly reduced CLE45 levels in root meristems (PubMed:23569225).7 Publications

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003738211 – 344Protein BREVIS RADIXAdd BLAST344

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q17TI5

PRoteomics IDEntifications database

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PRIDEi
Q17TI5

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
240364

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed in the developing protophloem up to the elongation zone in root meristem of young seedlings, in the columella and the phloem vasculature throughout the root and in the phloem vasculature in the shoot (PubMed:23569225). Detected in the shoot meristem and in primordia. Low expression in stomata. Confined to sieve element precursor cells and to protophloem (PubMed:25049386).6 Publications

<p>This subsection of the 'Expression' section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified 'at the protein level'.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Ubiquitously expressed in early embryos and becomes restricted to the vasculature in the mature embryo and at later stages of development (PubMed:19465596). Expressed in roots developing protophloem, up to the end of the transition zone, as well as in the root tip meristem (PubMed:23569225).2 Publications

<p>This subsection of the 'Expression' section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

Up-regulated by auxin and down-regulated by brassinolide.1 Publication

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
Q17TI5, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
Q17TI5, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Homodimer and heterodimer with BRXL1.

Interacts with NGA1 and ARF5.

3 Publications

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Q17TI5
With#Exp.IntAct
AFP4 [Q9S7Z2]3EBI-4426649,EBI-1778843
AHG1 [Q9FLI3]3EBI-4426649,EBI-2363348
AHL12 [Q8LPN5]3EBI-4426649,EBI-4428689
APRR1 [Q9LKL2]3EBI-4426649,EBI-618423
ARR14 [Q8L9Y3]3EBI-4426649,EBI-1100737
ASHR3 [Q949T8]3EBI-4426649,EBI-4457339
At1g03900 [Q681Q7]4EBI-4426649,EBI-4440643
At1g06460 [Q9SHJ1]3EBI-4426649,EBI-25516773
At1g12120 [Q9FWW2]3EBI-4426649,EBI-25518624
At1g54200 [Q9SLL2]3EBI-4426649,EBI-25516987
At1g76070 [Q9SGS5]3EBI-4426649,EBI-25519221
At2g35010 [O64764]3EBI-4426649,EBI-25519089
At3g16560 [Q9LUS8]3EBI-4426649,EBI-25519200
At3g18295 [Q9LS61]3EBI-4426649,EBI-21457081
At3g48510 [A0A384KYS8]3EBI-4426649,EBI-25517043
At4g03250 [F4JI72]3EBI-4426649,EBI-15192535
At4g21660 [A0A1P8B4Y6]3EBI-4426649,EBI-25519178
At5g16400 [Q9XFH9]3EBI-4426649,EBI-25516100
At5g19340 [Q6NM33]3EBI-4426649,EBI-25518939
At5g59490 [Q9LTI1]3EBI-4426649,EBI-25518827
AXX17_At1g00240 [A0A384LJI7]3EBI-4426649,EBI-25518871
AXX17_At1g24430 [A0A178WMH3]3EBI-4426649,EBI-25519119
AXX17_At1g45300 [A0A178W725]3EBI-4426649,EBI-25515760
AXX17_At5g49040 [A0A178UKR9]3EBI-4426649,EBI-25518767
BHLH153 [Q7XJU2]5EBI-4426649,EBI-4427748
BIM1 [Q9LEZ3]5EBI-4426649,EBI-617095
BPC2 [Q9LDE2]3EBI-4426649,EBI-15215888
CDSP32 [Q9SGS4]3EBI-4426649,EBI-25517863
CIPK16 [Q9SEZ7]3EBI-4426649,EBI-1573415
CIPK9 [Q9MAM1]4EBI-4426649,EBI-1765282
CXE17 [Q9LFR7]5EBI-4426649,EBI-4456165
D6PK [Q9FG74]3EBI-4426649,EBI-1103570
D6PKL1 [Q9SUA3]3EBI-4426649,EBI-1103605
D6PKL3 [Q05999]4EBI-4426649,EBI-1103648
dl3050c [O23263]3EBI-4426649,EBI-25519155
DRB5 [Q8GY79]3EBI-4426649,EBI-632672
DSP2 [Q84MD6]6EBI-4426649,EBI-4424266
ECT11 [Q56XH8]3EBI-4426649,EBI-25516971
EDR4 [Q9FHK4]3EBI-4426649,EBI-1544548
EIF3G1 [F4J6A1]3EBI-4426649,EBI-25518734
ERF8 [Q9MAI5]3EBI-4426649,EBI-2000137
FIP37 [Q9ZSZ8]4EBI-4426649,EBI-1641243
FLZ10 [Q9LYE4]3EBI-4426649,EBI-25519036
GA3OX1 [Q39103]5EBI-4426649,EBI-4426378
GIL1 [F4KGE8]3EBI-4426649,EBI-25519238
GRXS15 [Q8LBK6]3EBI-4426649,EBI-4427398
GWD1 [Q9SAC6]3EBI-4426649,EBI-2355356
HDT3 [Q9LZR5]3EBI-4426649,EBI-3387398
HDT4 [Q9M4T3]3EBI-4426649,EBI-25518903
IDD14 [Q9C9X7]3EBI-4426649,EBI-15191579
LIP2P [Q948J9]3EBI-4426649,EBI-25519006
LSM2 [Q1H595]3EBI-4426649,EBI-9347308
MBD1 [Q5XEN5]3EBI-4426649,EBI-4445335
MKK4 [O80397]6EBI-4426649,EBI-2358409
MPK18 [Q9C5C0]3EBI-4426649,EBI-1238534
MPK20 [Q9SJG9]5EBI-4426649,EBI-2358896
MWD9.9 [Q93ZM2]4EBI-4426649,EBI-4428808
MYB105 [Q9SEZ4]3EBI-4426649,EBI-15202260
MYB3 [Q9S9K9]3EBI-4426649,EBI-1786591
MYJ24.12 [Q8VYP8]3EBI-4426649,EBI-4442894
NCBP [Q9FK59]3EBI-4426649,EBI-1770573
NGA1 [O82799]6EBI-4426649,EBI-4427936
NIA2 [P11035]3EBI-4426649,EBI-4451150
PKS1 [Q9SWI1]3EBI-4426649,EBI-626200
PKS2 [Q9M9T4]3EBI-4426649,EBI-25512733
PKS4 [Q9FYE2]3EBI-4426649,EBI-25513821
psaD1 [Q9S7H1]3EBI-4426649,EBI-1805558
PUB20 [Q9C8D1]3EBI-4426649,EBI-25516153
PUB30 [Q058P4]3EBI-4426649,EBI-4442587
RHY1A [Q852U6]4EBI-4426649,EBI-4428791
SK2 [Q8GY88]3EBI-4426649,EBI-1238334
STOP2 [Q0WT24]3EBI-4426649,EBI-4424123
TOE2 [Q9LVG2]4EBI-4426649,EBI-4424568
VQ29 [Q9SZG3]3EBI-4426649,EBI-25517843
WAVH2 [Q0WQX9]3EBI-4426649,EBI-4426718
WRKY12 [Q93WY4]3EBI-4426649,EBI-25513081
WRKY17 [Q9SJA8]6EBI-4426649,EBI-2365037
WRKY36 [Q9CAR4]3EBI-4426649,EBI-15210240
XRN4 [Q9FQ04]3EBI-4426649,EBI-25511549

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

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BioGRIDi
25312, 96 interactors

Protein interaction database and analysis system

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IntActi
Q17TI5, 94 interactors

STRING: functional protein association networks

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STRINGi
3702.AT1G31880.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q17TI5

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini139 – 194BRX 1PROSITE-ProRule annotationAdd BLAST56
Domaini289 – 344BRX 2PROSITE-ProRule annotationAdd BLAST56

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni203 – 286DisorderedSequence analysisAdd BLAST84

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi214 – 234Basic and acidic residuesSequence analysisAdd BLAST21
Compositional biasi267 – 286Polar residuesSequence analysisAdd BLAST20

<p>This subsection of the 'Family and domains' section provides general information on the biological role of a domain. The term 'domain' is intended here in its wide acceptation, it may be a structural domain, a transmembrane region or a functional domain. Several domains are described in this subsection.<p><a href='/help/domain_cc' target='_top'>More...</a></p>Domaini

The DZC domain is necessary and sufficient for dimerization. A C-terminal fragment containing both DZC domains is able to rescue the short root phenotype. The N-terminal part (1-57) promotes BRX membrane association and is required for efficient degradation in the nucleus.1 Publication

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the BRX family.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
ENOG502QU4N, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
CLU_033380_0_1_1

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q17TI5

Database for complete collections of gene phylogenies

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PhylomeDBi
Q17TI5

Family and domain databases

Integrated resource of protein families, domains and functional sites

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InterProi
View protein in InterPro
IPR013591, Brevis_radix_dom
IPR044532, BRX-like
IPR027988, BRX_N

The PANTHER Classification System

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PANTHERi
PTHR46058, PTHR46058, 1 hit

Pfam protein domain database

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Pfami
View protein in Pfam
PF08381, BRX, 2 hits
PF13713, BRX_N, 1 hit

PROSITE; a protein domain and family database

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PROSITEi
View protein in PROSITE
PS51514, BRX, 2 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q17TI5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MFSCIACTKA DGGEEVEHGA RGGTTPNTKE AVKSLTIQIK DMALKFSGAY
60 70 80 90 100
KQCKPCTGSS SSPLKKGHRS FPDYDNASEG VPYPFMGGSA GSTPAWDFTN
110 120 130 140 150
SSHHPAGRLE SKFTSIYGND RESISAQSCD VVLDDDGPKE WMAQVEPGVH
160 170 180 190 200
ITFASLPTGG NDLKRIRFSR EMFDKWQAQR WWGENYDKIV ELYNVQRFNR
210 220 230 240 250
QALQTPARSD DQSQRDSTYS KMDSARESKD WTPRHNFRPP GSVPHHFYGG
260 270 280 290 300
SSNYGPGSYH GGPPMDAART TTSSRDDPPS MSNASEMQAE WIEEDEPGVY
310 320 330 340
ITIRQLSDGT RELRRVRFSR ERFGEVHAKT WWEQNRERIQ TQYL
Length:344
Mass (Da):38,761
Last modified:May 5, 2009 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iD36075D26158FFD7
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8AWZ2A0A1P8AWZ2_ARATH
DZC (Disease resistance/zinc finger...
BRX BREVIS RADIX, NIP3;1, NLM9, At1g31880, F5M6.11
358Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAG50720 differs from that shown. Reason: Erroneous gene model prediction.Curated

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural varianti141 – 344Missing in strain: cv. Uk-1. Add BLAST204
Natural varianti310T → S in strain: cv. Uk-2. 1

Sequence databases

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EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

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DDBJi
Links Updated
AY702648 mRNA Translation: ABG25052.1
AY702649 mRNA Translation: ABG25053.1
AC079041 Genomic DNA Translation: AAG50720.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE31412.1
BT002854 mRNA Translation: AAO22671.1
BT004390 mRNA Translation: AAO42384.1

Protein sequence database of the Protein Information Resource

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PIRi
A86443

NCBI Reference Sequences

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RefSeqi
NP_174471.2, NM_102925.3

Genome annotation databases

Ensembl plant genome annotation project

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EnsemblPlantsi
AT1G31880.1; AT1G31880.1; AT1G31880

Database of genes from NCBI RefSeq genomes

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GeneIDi
840078

Gramene; a comparative resource for plants

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Gramenei
AT1G31880.1; AT1G31880.1; AT1G31880

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
ath:AT1G31880

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AY702648 mRNA Translation: ABG25052.1
AY702649 mRNA Translation: ABG25053.1
AC079041 Genomic DNA Translation: AAG50720.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE31412.1
BT002854 mRNA Translation: AAO22671.1
BT004390 mRNA Translation: AAO42384.1
PIRiA86443
RefSeqiNP_174471.2, NM_102925.3

3D structure databases

SMRiQ17TI5
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi25312, 96 interactors
IntActiQ17TI5, 94 interactors
STRINGi3702.AT1G31880.1

Proteomic databases

PaxDbiQ17TI5
PRIDEiQ17TI5
ProteomicsDBi240364

Genome annotation databases

EnsemblPlantsiAT1G31880.1; AT1G31880.1; AT1G31880
GeneIDi840078
GrameneiAT1G31880.1; AT1G31880.1; AT1G31880
KEGGiath:AT1G31880

Organism-specific databases

AraportiAT1G31880
TAIRilocus:2034486, AT1G31880

Phylogenomic databases

eggNOGiENOG502QU4N, Eukaryota
HOGENOMiCLU_033380_0_1_1
InParanoidiQ17TI5
PhylomeDBiQ17TI5

Miscellaneous databases

Protein Ontology

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PROi
PR:Q17TI5

Gene expression databases

ExpressionAtlasiQ17TI5, baseline and differential
GenevisibleiQ17TI5, AT

Family and domain databases

InterProiView protein in InterPro
IPR013591, Brevis_radix_dom
IPR044532, BRX-like
IPR027988, BRX_N
PANTHERiPTHR46058, PTHR46058, 1 hit
PfamiView protein in Pfam
PF08381, BRX, 2 hits
PF13713, BRX_N, 1 hit
PROSITEiView protein in PROSITE
PS51514, BRX, 2 hits

MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiBRX_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q17TI5
Secondary accession number(s): Q17TI6, Q84JB6, Q9C6S9
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: May 5, 2009
Last sequence update: May 5, 2009
Last modified: June 2, 2021
This is version 74 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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