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Protein

ATP-dependent RNA helicase DHX8

Gene

DHX8

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Involved in pre-mRNA splicing as component of the spliceosome (PubMed:11991638, PubMed:28502770, PubMed:28076346). Facilitates nuclear export of spliced mRNA by releasing the RNA from the spliceosome (PubMed:8608946).4 Publications

Catalytic activityi

ATP + H2O = ADP + phosphate.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi588 – 595ATPPROSITE-ProRule annotation8

GO - Molecular functioni

  • ATP binding Source: UniProtKB-KW
  • ATP-dependent 3'-5' RNA helicase activity Source: GO_Central
  • ATP-dependent RNA helicase activity Source: ProtInc
  • identical protein binding Source: IntAct
  • RNA binding Source: UniProtKB

GO - Biological processi

Keywordsi

Molecular functionHelicase, Hydrolase
Biological processmRNA processing, mRNA splicing
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
ATP-dependent RNA helicase DHX8 (EC:3.6.4.13)
Alternative name(s):
DEAH box protein 8
RNA helicase HRH12 Publications
Gene namesi
Name:DHX8
Synonyms:DDX8
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 17

Organism-specific databases

EuPathDBiHostDB:ENSG00000067596.10
HGNCiHGNC:2749 DHX8
MIMi600396 gene
neXtProtiNX_Q14562

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus, Spliceosome

Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Mutagenesisi594K → E in GET; inhibition of pre-mRNA splicing and nuclear export of unspliced RNA. 1
Mutagenesisi717S → L in LAT; inhibition of pre-mRNA splicing and nuclear export of unspliced RNA. 1

Organism-specific databases

OpenTargetsiENSG00000067596
PharmGKBiPA27231

Polymorphism and mutation databases

BioMutaiDHX8
DMDMi3023637

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000551311 – 1220ATP-dependent RNA helicase DHX8Add BLAST1220

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Cross-linki140Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources
Modified residuei395PhosphoserineCombined sources1
Cross-linki399Glycyl lysine isopeptide (Lys-Gly) (interchain with G-Cter in SUMO2)Combined sources
Modified residuei460PhosphoserineCombined sources1

Keywords - PTMi

Isopeptide bond, Phosphoprotein, Ubl conjugation

Proteomic databases

EPDiQ14562
MaxQBiQ14562
PaxDbiQ14562
PeptideAtlasiQ14562
PRIDEiQ14562
ProteomicsDBi60044

PTM databases

iPTMnetiQ14562
PhosphoSitePlusiQ14562

Expressioni

Gene expression databases

BgeeiENSG00000067596 Expressed in 188 organ(s), highest expression level in leukocyte
CleanExiHS_DHX8
ExpressionAtlasiQ14562 baseline and differential
GenevisibleiQ14562 HS

Organism-specific databases

HPAiHPA049285

Interactioni

Subunit structurei

Identified in the spliceosome C complex (PubMed:11991638, PubMed:28502770, PubMed:28076346). Interacts with ARRB2; the interaction is detected in the nucleus upon OR1D2 stimulation (PubMed:16820410).4 Publications

Binary interactionsi

GO - Molecular functioni

Protein-protein interaction databases

BioGridi108024, 88 interactors
CORUMiQ14562
IntActiQ14562, 29 interactors
MINTiQ14562
STRINGi9606.ENSP00000262415

Structurei

Secondary structure

11220
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliQ14562
SMRiQ14562
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ14562

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini265 – 336S1 motifPROSITE-ProRule annotationAdd BLAST72
Domaini575 – 738Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST164
Domaini756 – 936Helicase C-terminalPROSITE-ProRule annotationAdd BLAST181

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi685 – 688DEAH box4

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi172 – 175Poly-Lys4
Compositional biasi176 – 228Arg/Ser-rich (RS domain)Add BLAST53

Domaini

The RS domain confers a nuclear localization signal, and appears to facilitate the interaction with the spliceosome.

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0922 Eukaryota
COG1185 LUCA
COG1643 LUCA
GeneTreeiENSGT00910000144017
HOGENOMiHOG000175261
HOVERGENiHBG039428
InParanoidiQ14562
KOiK12818
OMAiIQKAICS
OrthoDBiEOG091G030Q
PhylomeDBiQ14562
TreeFamiTF300509

Family and domain databases

CDDicd00079 HELICc, 1 hit
InterProiView protein in InterPro
IPR002464 DNA/RNA_helicase_DEAH_CS
IPR011709 DUF1605
IPR007502 Helicase-assoc_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR012340 NA-bd_OB-fold
IPR027417 P-loop_NTPase
IPR022967 S1_dom
IPR003029 S1_domain
PfamiView protein in Pfam
PF04408 HA2, 1 hit
PF00271 Helicase_C, 1 hit
PF07717 OB_NTP_bind, 1 hit
PF00575 S1, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00847 HA2, 1 hit
SM00490 HELICc, 1 hit
SM00316 S1, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
SSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00690 DEAH_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS50126 S1, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 4 potential isoforms that are computationally mapped.Show allAlign All

Q14562-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAVAVAMAGA LIGSEPGPAE ELAKLEYLSL VSKVCTELDN HLGINDKDLA
60 70 80 90 100
EFVISLAEKN TTFDTFKASL VKNGAEFTDS LISNLLRLIQ TMRPPAKPST
110 120 130 140 150
SKDPVVKPKT EKEKLKELFP VLCQPDNPSV RTMLDEDDVK VAVDVLKELE
160 170 180 190 200
ALMPSAAGQE KQRDAEHRDR TKKKKRSRSR DRNRDRDRDR ERNRDRDHKR
210 220 230 240 250
RHRSRSRSRS RTRERNKVKS RYRSRSRSQS PPKDRKDRDK YGERNLDRWR
260 270 280 290 300
DKHVDRPPPE EPTIGDIYNG KVTSIMQFGC FVQLEGLRKR WEGLVHISEL
310 320 330 340 350
RREGRVANVA DVVSKGQRVK VKVLSFTGTK TSLSMKDVDQ ETGEDLNPNR
360 370 380 390 400
RRNLVGETNE ETSMRNPDRP THLSLVSAPE VEDDSLERKR LTRISDPEKW
410 420 430 440 450
EIKQMIAANV LSKEEFPDFD EETGILPKVD DEEDEDLEIE LVEEEPPFLR
460 470 480 490 500
GHTKQSMDMS PIKIVKNPDG SLSQAAMMQS ALAKERRELK QAQREAEMDS
510 520 530 540 550
IPMGLNKHWV DPLPDAEGRQ IAANMRGIGM MPNDIPEWKK HAFGGNKASY
560 570 580 590 600
GKKTQMSILE QRESLPIYKL KEQLVQAVHD NQILIVIGET GSGKTTQITQ
610 620 630 640 650
YLAEAGYTSR GKIGCTQPRR VAAMSVAKRV SEEFGCCLGQ EVGYTIRFED
660 670 680 690 700
CTSPETVIKY MTDGMLLREC LIDPDLTQYA IIMLDEAHER TIHTDVLFGL
710 720 730 740 750
LKKTVQKRQD MKLIVTSATL DAVKFSQYFY EAPIFTIPGR TYPVEILYTK
760 770 780 790 800
EPETDYLDAS LITVMQIHLT EPPGDILVFL TGQEEIDTAC EILYERMKSL
810 820 830 840 850
GPDVPELIIL PVYSALPSEM QTRIFDPAPP GSRKVVIATN IAETSLTIDG
860 870 880 890 900
IYYVVDPGFV KQKVYNSKTG IDQLVVTPIS QAQAKQRAGR AGRTGPGKCY
910 920 930 940 950
RLYTERAYRD EMLTTNVPEI QRTNLASTVL SLKAMGINDL LSFDFMDAPP
960 970 980 990 1000
METLITAMEQ LYTLGALDDE GLLTRLGRRM AEFPLEPMLC KMLIMSVHLG
1010 1020 1030 1040 1050
CSEEMLTIVS MLSVQNVFYR PKDKQALADQ KKAKFHQTEG DHLTLLAVYN
1060 1070 1080 1090 1100
SWKNNKFSNP WCYENFIQAR SLRRAQDIRK QMLGIMDRHK LDVVSCGKST
1110 1120 1130 1140 1150
VRVQKAICSG FFRNAAKKDP QEGYRTLIDQ QVVYIHPSSA LFNRQPEWVV
1160 1170 1180 1190 1200
YHELVLTTKE YMREVTTIDP RWLVEFAPAF FKVSDPTKLS KQKKQQRLEP
1210 1220
LYNRYEEPNA WRISRAFRRR
Length:1,220
Mass (Da):139,315
Last modified:November 1, 1996 - v1
Checksum:i17C1602A73A0EF24
GO

Computationally mapped potential isoform sequencesi

There are 4 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F5H658F5H658_HUMAN
ATP-dependent RNA helicase DHX8
DHX8
1,181Annotation score:
K7END7K7END7_HUMAN
ATP-dependent RNA helicase DHX8
DHX8
138Annotation score:
K7EQH7K7EQH7_HUMAN
ATP-dependent RNA helicase DHX8
DHX8
53Annotation score:
K7EJH9K7EJH9_HUMAN
ATP-dependent RNA helicase DHX8
DHX8
33Annotation score:

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_0521741069A → G. Corresponds to variant dbSNP:rs34285079Ensembl.1

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50487 mRNA Translation: BAA09078.1
CCDSiCCDS11464.1
PIRiA56236
RefSeqiNP_001289552.1, NM_001302623.1
NP_004932.1, NM_004941.2
UniGeneiHs.463105

Genome annotation databases

EnsembliENST00000262415; ENSP00000262415; ENSG00000067596
GeneIDi1659
KEGGihsa:1659
UCSCiuc002idu.2 human

Keywords - Coding sequence diversityi

Polymorphism

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
D50487 mRNA Translation: BAA09078.1
CCDSiCCDS11464.1
PIRiA56236
RefSeqiNP_001289552.1, NM_001302623.1
NP_004932.1, NM_004941.2
UniGeneiHs.463105

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2EQSNMR-A260-355[»]
3I4UX-ray2.10A950-1183[»]
5MQFelectron microscopy5.90q1-1220[»]
5XJCelectron microscopy3.60Y1-1220[»]
ProteinModelPortaliQ14562
SMRiQ14562
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi108024, 88 interactors
CORUMiQ14562
IntActiQ14562, 29 interactors
MINTiQ14562
STRINGi9606.ENSP00000262415

PTM databases

iPTMnetiQ14562
PhosphoSitePlusiQ14562

Polymorphism and mutation databases

BioMutaiDHX8
DMDMi3023637

Proteomic databases

EPDiQ14562
MaxQBiQ14562
PaxDbiQ14562
PeptideAtlasiQ14562
PRIDEiQ14562
ProteomicsDBi60044

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000262415; ENSP00000262415; ENSG00000067596
GeneIDi1659
KEGGihsa:1659
UCSCiuc002idu.2 human

Organism-specific databases

CTDi1659
EuPathDBiHostDB:ENSG00000067596.10
GeneCardsiDHX8
HGNCiHGNC:2749 DHX8
HPAiHPA049285
MIMi600396 gene
neXtProtiNX_Q14562
OpenTargetsiENSG00000067596
PharmGKBiPA27231
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG0922 Eukaryota
COG1185 LUCA
COG1643 LUCA
GeneTreeiENSGT00910000144017
HOGENOMiHOG000175261
HOVERGENiHBG039428
InParanoidiQ14562
KOiK12818
OMAiIQKAICS
OrthoDBiEOG091G030Q
PhylomeDBiQ14562
TreeFamiTF300509

Miscellaneous databases

ChiTaRSiDHX8 human
EvolutionaryTraceiQ14562
GenomeRNAii1659
PROiPR:Q14562
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000067596 Expressed in 188 organ(s), highest expression level in leukocyte
CleanExiHS_DHX8
ExpressionAtlasiQ14562 baseline and differential
GenevisibleiQ14562 HS

Family and domain databases

CDDicd00079 HELICc, 1 hit
InterProiView protein in InterPro
IPR002464 DNA/RNA_helicase_DEAH_CS
IPR011709 DUF1605
IPR007502 Helicase-assoc_dom
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR012340 NA-bd_OB-fold
IPR027417 P-loop_NTPase
IPR022967 S1_dom
IPR003029 S1_domain
PfamiView protein in Pfam
PF04408 HA2, 1 hit
PF00271 Helicase_C, 1 hit
PF07717 OB_NTP_bind, 1 hit
PF00575 S1, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00847 HA2, 1 hit
SM00490 HELICc, 1 hit
SM00316 S1, 1 hit
SUPFAMiSSF50249 SSF50249, 1 hit
SSF52540 SSF52540, 1 hit
PROSITEiView protein in PROSITE
PS00690 DEAH_ATP_HELICASE, 1 hit
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS50126 S1, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiDHX8_HUMAN
AccessioniPrimary (citable) accession number: Q14562
Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 15, 1998
Last sequence update: November 1, 1996
Last modified: November 7, 2018
This is version 180 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. Human chromosome 17
    Human chromosome 17: entries, gene names and cross-references to MIM
  6. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
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