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Protein

Beta-(1-->2)glucan export ATP-binding/permease protein NdvA

Gene

ndvA

Organism
Rhodopseudomonas palustris (strain BisB5)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

Involved in beta-(1-->2)glucan export. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation (By similarity).By similarity

Catalytic activityi

ATP + H2O + beta-glucan(In) = ADP + phosphate + beta-glucan(Out).UniRule annotation

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi378 – 385ATPUniRule annotation8

GO - Molecular functioni

Keywordsi

Molecular functionHydrolase
Biological processSugar transport, Transport
LigandATP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Beta-(1-->2)glucan export ATP-binding/permease protein NdvAUniRule annotation (EC:3.6.3.42UniRule annotation)
Gene namesi
Name:ndvAUniRule annotation
Ordered Locus Names:RPD_1325
OrganismiRhodopseudomonas palustris (strain BisB5)
Taxonomic identifieri316057 [NCBI]
Taxonomic lineageiBacteriaProteobacteriaAlphaproteobacteriaRhizobialesBradyrhizobiaceaeRhodopseudomonas
Proteomesi
  • UP000001818 Componenti: Chromosome

Subcellular locationi

  • Cell inner membrane UniRule annotation; Multi-pass membrane protein UniRule annotation

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transmembranei22 – 42HelicalUniRule annotationAdd BLAST21
Transmembranei68 – 88HelicalUniRule annotationAdd BLAST21
Transmembranei146 – 166HelicalUniRule annotationAdd BLAST21
Transmembranei167 – 187HelicalUniRule annotationAdd BLAST21
Transmembranei254 – 274HelicalUniRule annotationAdd BLAST21
Transmembranei276 – 296HelicalUniRule annotationAdd BLAST21

GO - Cellular componenti

Keywords - Cellular componenti

Cell inner membrane, Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002902551 – 602Beta-(1-->2)glucan export ATP-binding/permease protein NdvAAdd BLAST602

Interactioni

Subunit structurei

Homodimer.UniRule annotation

Protein-protein interaction databases

STRINGi316057.RPD_1325

Structurei

3D structure databases

ProteinModelPortaliQ13BH6
SMRiQ13BH6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini21 – 311ABC transmembrane type-1UniRule annotationAdd BLAST291
Domaini345 – 579ABC transporterUniRule annotationAdd BLAST235

Domaini

In NdvA the ATP-binding domain (NBD) and the transmembrane domain (TMD) are fused.

Sequence similaritiesi

Belongs to the ABC transporter superfamily. Beta-(1-->2)glucan exporter (TC 3.A.1.108.1) family. [View classification]UniRule annotation

Keywords - Domaini

Transmembrane, Transmembrane helix

Phylogenomic databases

eggNOGiENOG4105BZ1 Bacteria
COG1132 LUCA
KOiK06147
OMAiMPVLSWW
OrthoDBiPOG091H00DB

Family and domain databases

Gene3Di1.20.1560.10, 1 hit
InterProiView protein in InterPro
IPR003593 AAA+_ATPase
IPR011527 ABC1_TM_dom
IPR036640 ABC1_TM_sf
IPR017902 ABC_bGlucan_ATPase
IPR003439 ABC_transporter-like
IPR017871 ABC_transporter_CS
IPR027417 P-loop_NTPase
PfamiView protein in Pfam
PF00664 ABC_membrane, 1 hit
PF00005 ABC_tran, 1 hit
SMARTiView protein in SMART
SM00382 AAA, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
SSF90123 SSF90123, 2 hits
PROSITEiView protein in PROSITE
PS50929 ABC_TM1F, 1 hit
PS00211 ABC_TRANSPORTER_1, 1 hit
PS50893 ABC_TRANSPORTER_2, 1 hit
PS51317 NDVA, 1 hit

Sequencei

Sequence statusi: Complete.

Q13BH6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MSLFRLYTRV LELLGKERRL GWTLAVANLL LATAQFAEPV LFGRIIDVMS
60 70 80 90 100
GNLATGALVP ETRSPWPLLA AWVGFGLFTI LCSATVALHA DRLAHRQRQA
110 120 130 140 150
VLTSYFEHIL QLPLTFHTGT HSGRLMKVML QGTDALWRVW LGFFREHFAA
160 170 180 190 200
ILSLVVLLPL SLYINWRLAI LLFALCGVFT VLTTLVVRKT YGMQNEVEAQ
210 220 230 240 250
YSDLSARASD ALGNVALVQS YVRVDAEVQG LRFVADKLLA AQMPVLSWWA
260 270 280 290 300
LVTVITRAST TITVLAIFSL GIALNQQGLT SVGEIVMFVS FATLLIQRLE
310 320 330 340 350
QVVSFVNSLM MEAPRLQEFI TVLDAVPAVR DRPDAIDPGR LSGLVEFLDV
360 370 380 390 400
SFSYDGKRPA IEDLSFTALP GQTIALVGAT GAGKSTAIAL LHRAFDPQSG
410 420 430 440 450
VVKIDGMDVR GLTMSGLRRN IGVVFQEALL FNRSIAENLR VGKPDATDAE
460 470 480 490 500
LRLAAERAQA LDFIDRNDLG FDTNAGERGR MLSGGERQRL SIARALLKDP
510 520 530 540 550
PILILDEATS ALDAVTEAKV NLALDEVMKG RTTFVIAHRL STIRHATRIL
560 570 580 590 600
VFDNGKVIES GTFDELVAQR GRFAELARAQ FMVQEEARAA VATATDDAPV

RL
Length:602
Mass (Da):65,967
Last modified:October 31, 2006 - v1
Checksum:iC917312779E3222C
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000283 Genomic DNA Translation: ABE38563.1

Genome annotation databases

EnsemblBacteriaiABE38563; ABE38563; RPD_1325
KEGGirpd:RPD_1325

Similar proteinsi

Entry informationi

Entry nameiNDVA_RHOPS
AccessioniPrimary (citable) accession number: Q13BH6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 12, 2007
Last sequence update: October 31, 2006
Last modified: January 31, 2018
This is version 81 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families

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