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Protein

50S ribosomal protein L13

Gene

rpl13

Organism
Methanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

BioCyciMBUR259564:G1G6A-2513-MONOMER

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rpl13UniRule annotation
Ordered Locus Names:Mbur_2389
OrganismiMethanococcoides burtonii (strain DSM 6242 / NBRC 107633 / OCM 468 / ACE-M)
Taxonomic identifieri259564 [NCBI]
Taxonomic lineageiArchaeaEuryarchaeotaMethanomicrobiaMethanosarcinalesMethanosarcinaceaeMethanococcoides
Proteomesi
  • UP000001979 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002618371 – 13950S ribosomal protein L13Add BLAST139

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi259564.Mbur_2389

Structurei

3D structure databases

ProteinModelPortaliQ12TI6
SMRiQ12TI6
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiarCOG04242 Archaea
COG0102 LUCA
HOGENOMiHOG000225287
KOiK02871
OMAiYHNFLHK
OrthoDBiPOG093Z0DQ4

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR023563 Ribosomal_L13_CS
IPR005755 Ribosomal_L13_euk/arc
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PTHR11545:SF3 PTHR11545:SF3, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01077 L13_A_E, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

Q12TI6-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MTVIDANGLI MGRLASNVAK MLLSGEEVSI VNAERAVISG SKVTTFEEYD
60 70 80 90 100
VIRNMGTREF GPYFPRRPDR ILKRTVRGML PYKRARGKDA MGRLKVYVGI
110 120 130
PYEYQDAEFV SVEGAEMTRL SSNKYVTIGD VSRQLGSKF
Length:139
Mass (Da):15,592
Last modified:August 22, 2006 - v1
Checksum:iE82D1969DB2B954D
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000300 Genomic DNA Translation: ABE53240.1
RefSeqiWP_011500375.1, NC_007955.1

Genome annotation databases

EnsemblBacteriaiABE53240; ABE53240; Mbur_2389
GeneIDi3998976
KEGGimbu:Mbur_2389

Similar proteinsi

Entry informationi

Entry nameiRL13_METBU
AccessioniPrimary (citable) accession number: Q12TI6
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 28, 2006
Last sequence update: August 22, 2006
Last modified: March 28, 2018
This is version 68 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

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