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Entry version 75 (31 Jul 2019)
Sequence version 1 (22 Aug 2006)
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Protein
Submitted name:

CHU large protein candidate b-glycosidase, glycoside hydrolase family 9 protein

Gene

CHU_0961

Organism
Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionGlycosidaseImported, Hydrolase

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

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BioCyci
CHUT269798:G1G6N-944-MONOMER

Protein family/group databases

Carbohydrate-Active enZymes

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CAZyi
GH9 Glycoside Hydrolase Family 9

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
CHU large protein candidate b-glycosidase, glycoside hydrolase family 9 proteinImported (EC:3.2.1.-Imported)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:CHU_0961Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri269798 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaBacteroidetesCytophagiaCytophagalesCytophagaceaeCytophaga
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001822 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section denotes the presence of an N-terminal signal peptide.<p><a href='/help/signal' target='_top'>More...</a></p>Signal peptidei1 – 20Sequence analysisAdd BLAST20
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_501022673821 – 1452Sequence analysisAdd BLAST1432

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
269798.CHU_0961

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini761 – 843PKDInterPro annotationAdd BLAST83

Keywords - Domaini

SignalSequence analysis

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG4106HIG Bacteria
ENOG410XSBI LUCA

Database of Orthologous Groups

More...
OrthoDBi
1226595at2

Family and domain databases

Conserved Domains Database

More...
CDDi
cd02850 E_set_Cellulase_N, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.50.10.10, 1 hit
2.60.120.260, 1 hit
2.60.40.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR008928 6-hairpin_glycosidase_sf
IPR012341 6hp_glycosidase-like_sf
IPR004197 Cellulase_Ig-like
IPR008979 Galactose-bd-like_sf
IPR001701 Glyco_hydro_9
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR022409 PKD/Chitinase_dom
IPR000601 PKD_dom
IPR035986 PKD_dom_sf
IPR026444 Secre_tail

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02927 CelD_N, 1 hit
PF00759 Glyco_hydro_9, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00089 PKD, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48208 SSF48208, 1 hit
SSF49299 SSF49299, 1 hit
SSF49785 SSF49785, 1 hit
SSF81296 SSF81296, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR04183 Por_Secre_tail, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50093 PKD, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q11WH8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKNTFNALLL VLITISTAFS QTGMLENFND NALDPGWKSV PAGKFSFAES
60 70 80 90 100
GGQLVVTPSA VGPGWENIEF SFSPIDLTAN QTVSIKIKNS SALTLRVDLI
110 120 130 140 150
DNTGKSTNGS PVSKSIAINS TLTTVTFDFT NKFSTSGGAA VDKTKISKVV
160 170 180 190 200
FFINAGGTSY STPVTLDDVT VGDPIANVPA TPGNIVLNQV GYELTGAKKA
210 220 230 240 250
IYTHTSNTLS ATTFDILTAS NAVVYTGTIV SKGAVTGWTN KYFWELNFSD
260 270 280 290 300
FQTPGTYKIR VGTKVSYAFD IAQNVLFNKT AFSVVDFFKG MRSTNNADKT
310 320 330 340 350
LSFNGPRNDQ VNVYGGWIDA TGDPGKHMSH LSYANYFNPQ QIPFVVWSLL
360 370 380 390 400
KSYEISQASF TAKSTDLLNE SKWGADYLLR NIDKQQNYLY LAIFDNWGNS
410 420 430 440 450
PGSREICEWG QAGAGNDGAR TPNFQAGMRE GAGMAIAALA RAYRMNLNGD
460 470 480 490 500
STKAQYLNGA IRLYTNLKAP GTGYATKNLE YCNDHTENII DFYCGLLATI
510 520 530 540 550
ELYKATNNAA YLADASVYAD KLIGMLDPQG WFRSDVAGTR PFYHAADEGL
560 570 580 590 600
PLVSLMEYMD VDVSKNAAIT QVLSKNIAWY MSISKEVNNP FNYMREYYKP
610 620 630 640 650
YVNGSLGTAK KAFFVPHDNE TGYWWQGENA RLASMSTALL LAARKLNAQF
660 670 680 690 700
TIGTDSISTF GLAQLDWILG KNPFDVCMMT GAGTTTYQNY PVASAIPNVK
710 720 730 740 750
GGICNGITGK DTEETNIDWK PYASDDWQNW RWIEQWLPHD AWFLLAVSSL
760 770 780 790 800
DVANTPPPAA PVASFTISKQ SVCTGITTVL TNTSTGSTTS YVWDFGTGAS
810 820 830 840 850
ISGSTAAGPH TVSWTTSGTK TITLTVTGPN GTATTTSTVT VTAVPTAAGE
860 870 880 890 900
ITGVASVCAS TTGATYSIPA IATATSYAWT LPTGAAITAG ANTNAITVSF
910 920 930 940 950
ATAGGTIQVT PGNTCGTAAP ASKTITLTDK PTAAGEINGL ASVCASTTGV
960 970 980 990 1000
TYSIPAIATA TSYAWTLPTG AAITAGANTN AITISFAAAS GTIQVTPGNT
1010 1020 1030 1040 1050
CGTAAPASKT ITLTAKPTAA GEITGVASVC ASTTGITYSI PAIATATSYA
1060 1070 1080 1090 1100
WTLPTGAAIT AGANSNAITV SFATASGTIQ VTPGNTCGTA APASKTITLT
1110 1120 1130 1140 1150
DKPTAAGEIT GLASVCASTA GVTYSIPAIA TATSYAWTLP TGASITSGDN
1160 1170 1180 1190 1200
TNTITVSFAT TGGTIQVTPG NTCGTAAPAS KTITLTAKPT AAGEITGLAS
1210 1220 1230 1240 1250
VCASTAGVTY SIPAIATATS YAWTLPTGAA ITAGANTNAI TVSFATASGT
1260 1270 1280 1290 1300
IQITPSNTCG TAAPASKSVQ IIPIGSAPCT APVTSAIEGP SNIAPNVQNV
1310 1320 1330 1340 1350
TFSVTQHAGS AYTWAVPNGA TIVSGSGSSS IVVNFGNSGG IVSVQESNSY
1360 1370 1380 1390 1400
GTGTAVTKNV TMISTAIDAS SVTDIQINIH PNPSEQYCLL TTTTPAEELI
1410 1420 1430 1440 1450
DVTIIDMKGV VIMHQQWNTS QPLVLNSDLN AGIYIVQLKI QEQFITKRLI

RL
Length:1,452
Mass (Da):151,035
Last modified:August 22, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8CDAE804B2C9AAF6
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP000383 Genomic DNA Translation: ABG58238.1

NCBI Reference Sequences

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RefSeqi
WP_011584353.1, NZ_FPJX01000005.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ABG58238; ABG58238; CHU_0961

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
chu:CHU_0961

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000383 Genomic DNA Translation: ABG58238.1
RefSeqiWP_011584353.1, NZ_FPJX01000005.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi269798.CHU_0961

Protein family/group databases

CAZyiGH9 Glycoside Hydrolase Family 9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblBacteriaiABG58238; ABG58238; CHU_0961
KEGGichu:CHU_0961

Phylogenomic databases

eggNOGiENOG4106HIG Bacteria
ENOG410XSBI LUCA
OrthoDBi1226595at2

Enzyme and pathway databases

BioCyciCHUT269798:G1G6N-944-MONOMER

Family and domain databases

CDDicd02850 E_set_Cellulase_N, 1 hit
Gene3Di1.50.10.10, 1 hit
2.60.120.260, 1 hit
2.60.40.10, 2 hits
InterProiView protein in InterPro
IPR008928 6-hairpin_glycosidase_sf
IPR012341 6hp_glycosidase-like_sf
IPR004197 Cellulase_Ig-like
IPR008979 Galactose-bd-like_sf
IPR001701 Glyco_hydro_9
IPR013783 Ig-like_fold
IPR014756 Ig_E-set
IPR022409 PKD/Chitinase_dom
IPR000601 PKD_dom
IPR035986 PKD_dom_sf
IPR026444 Secre_tail
PfamiView protein in Pfam
PF02927 CelD_N, 1 hit
PF00759 Glyco_hydro_9, 1 hit
SMARTiView protein in SMART
SM00089 PKD, 1 hit
SUPFAMiSSF48208 SSF48208, 1 hit
SSF49299 SSF49299, 1 hit
SSF49785 SSF49785, 1 hit
SSF81296 SSF81296, 1 hit
TIGRFAMsiTIGR04183 Por_Secre_tail, 1 hit
PROSITEiView protein in PROSITE
PS50093 PKD, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ11WH8_CYTH3
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q11WH8
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: August 22, 2006
Last sequence update: August 22, 2006
Last modified: July 31, 2019
This is version 75 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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