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Entry version 183 (07 Oct 2020)
Sequence version 2 (02 Mar 2010)
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Protein

AP-1 complex subunit beta-1

Gene

AP1B1

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Subunit of clathrin-associated adaptor protein complex 1 that plays a role in protein sorting in the late-Golgi/trans-Golgi network (TGN) and/or endosomes (PubMed:31630791). The AP complexes mediate both the recruitment of clathrin to membranes and the recognition of sorting signals within the cytosolic tails of transmembrane cargo molecules.1 Publication

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processProtein transport, Transport

Enzyme and pathway databases

Pathway Commons web resource for biological pathway data

More...
PathwayCommonsi
Q10567

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-HSA-164940, Nef mediated downregulation of MHC class I complex cell surface expression
R-HSA-2132295, MHC class II antigen presentation
R-HSA-432720, Lysosome Vesicle Biogenesis
R-HSA-432722, Golgi Associated Vesicle Biogenesis

SIGNOR Signaling Network Open Resource

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SIGNORi
Q10567

Protein family/group databases

Transport Classification Database

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TCDBi
9.B.278.1.1, the organellar-targeting adaptor protein complex (o-apc) family

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
AP-1 complex subunit beta-1
Alternative name(s):
Adaptor protein complex AP-1 subunit beta-1
Adaptor-related protein complex 1 subunit beta-1
Beta-1-adaptin
Beta-adaptin 1
Clathrin assembly protein complex 1 beta large chain
Golgi adaptor HA1/AP1 adaptin beta subunit
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:AP1B1
Synonyms:ADTB1, BAM22, CLAPB2
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiHomo sapiens (Human)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri9606 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000005640 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 22

Organism-specific databases

Eukaryotic Pathogen Database Resources

More...
EuPathDBi
HostDB:ENSG00000100280.16

Human Gene Nomenclature Database

More...
HGNCi
HGNC:554, AP1B1

Online Mendelian Inheritance in Man (OMIM)

More...
MIMi
600157, gene

neXtProt; the human protein knowledge platform

More...
neXtProti
NX_Q10567

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Cytoplasmic vesicle, Golgi apparatus, Membrane

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

<p>This subsection of the 'Pathology and Biotech' section provides information on the disease(s) associated with genetic variations in a given protein. The information is extracted from the scientific literature and diseases that are also described in the <a href="http://www.ncbi.nlm.nih.gov/sites/entrez?db=omim">OMIM</a> database are represented with a <a href="http://www.uniprot.org/diseases">controlled vocabulary</a> in the following way:<p><a href='/help/involvement_in_disease' target='_top'>More...</a></p>Involvement in diseasei

Keratitis-ichthyosis-deafness syndrome, autosomal recessive (KIDAR)2 Publications
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionAn autosomal recessive form of keratitis-ichthyosis-deafness syndrome, a disease characterized by the association of hyperkeratotic skin lesions with vascularizing keratitis and profound sensorineural hearing loss. KIDAR patients manifest ichthyosis, failure to thrive and developmental delay in childhood, thrombocytopenia, photophobia, and progressive hearing loss. Low plasma copper and ceruloplasmin levels have been reported in some patients.
Related information in OMIM
Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural variantiVAR_083524144C → R in KIDAR. 1 Publication1
Natural variantiVAR_083525792 – 949Missing in KIDAR; no protein detected by Western blot in patient cells. 1 PublicationAdd BLAST158

Keywords - Diseasei

Deafness, Disease mutation, Ichthyosis

Organism-specific databases

DisGeNET

More...
DisGeNETi
162
MIMi242150, phenotype

Orphanet; a database dedicated to information on rare diseases and orphan drugs

More...
Orphaneti
171851, MEDNIK syndrome

The Pharmacogenetics and Pharmacogenomics Knowledge Base

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PharmGKBi
PA24844

Miscellaneous databases

Pharos NIH Druggable Genome Knowledgebase

More...
Pharosi
Q10567, Tbio

Polymorphism and mutation databases

BioMuta curated single-nucleotide variation and disease association database

More...
BioMutai
AP1B1

Domain mapping of disease mutations (DMDM)

More...
DMDMi
290457628

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001937381 – 949AP-1 complex subunit beta-1Add BLAST949

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section specifies the position and type of each modified residue excluding <a href="http://www.uniprot.org/manual/lipid">lipids</a>, <a href="http://www.uniprot.org/manual/carbohyd">glycans</a> and <a href="http://www.uniprot.org/manual/crosslnk">protein cross-links</a>.<p><a href='/help/mod_res' target='_top'>More...</a></p>Modified residuei318N6-acetyllysineCombined sources1
Modified residuei5743'-nitrotyrosineBy similarity1

Keywords - PTMi

Acetylation, Nitration

Proteomic databases

The CPTAC Assay portal

More...
CPTACi
CPTAC-1596

Encyclopedia of Proteome Dynamics

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EPDi
Q10567

jPOST - Japan Proteome Standard Repository/Database

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jPOSTi
Q10567

MassIVE - Mass Spectrometry Interactive Virtual Environment

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MassIVEi
Q10567

MaxQB - The MaxQuant DataBase

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MaxQBi
Q10567

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q10567

PeptideAtlas

More...
PeptideAtlasi
Q10567

PRoteomics IDEntifications database

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PRIDEi
Q10567

ProteomicsDB: a multi-organism proteome resource

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ProteomicsDBi
31533
58857 [Q10567-1]
58858 [Q10567-2]
58859 [Q10567-3]

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

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iPTMneti
Q10567

MetOSite database of methionine sulfoxide sites

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MetOSitei
Q10567

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q10567

SwissPalm database of S-palmitoylation events

More...
SwissPalmi
Q10567

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the 'Expression' section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified 'at protein level'.<br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Widely expressed.

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSG00000100280, Expressed in prostate gland and 240 other tissues

ExpressionAtlas, Differential and Baseline Expression

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ExpressionAtlasi
Q10567, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

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Genevisiblei
Q10567, HS

Organism-specific databases

Human Protein Atlas

More...
HPAi
ENSG00000100280, Low tissue specificity

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Adaptor protein complex 1 (AP-1) is a heterotetramer composed of two large adaptins (gamma-type subunit AP1G1 and beta-type subunit AP1B1), a medium adaptin (mu-type subunit AP1M1 or AP1M2) and a small adaptin (sigma-type subunit AP1S1 or AP1S2 or AP1S3).

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

Hide details

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

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BioGRIDi
106671, 121 interactors

ComplexPortal: manually curated resource of macromolecular complexes

More...
ComplexPortali
CPX-5047, Ubiquitous AP-1 Adaptor complex, sigma1a variant
CPX-5048, Ubiquitous AP-1 Adaptor complex, sigma1b variant
CPX-5049, Ubiquitous AP-1 Adaptor complex, sigma1c variant
CPX-5050, Endothelial AP-1 Adaptor complex, sigma1a variant

CORUM comprehensive resource of mammalian protein complexes

More...
CORUMi
Q10567

Database of interacting proteins

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DIPi
DIP-24207N

The Eukaryotic Linear Motif resource for Functional Sites in Proteins

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ELMi
Q10567

Protein interaction database and analysis system

More...
IntActi
Q10567, 88 interactors

Molecular INTeraction database

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MINTi
Q10567

STRING: functional protein association networks

More...
STRINGi
9606.ENSP00000350199

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

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RNActi
Q10567, protein

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1949
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q10567

Database of comparative protein structure models

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ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi576 – 725Pro-rich (stalk region)Add BLAST150

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

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eggNOGi
KOG1061, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_006320_1_1_1

InParanoid: Eukaryotic Ortholog Groups

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InParanoidi
Q10567

KEGG Orthology (KO)

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KOi
K12392

Database of Orthologous Groups

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OrthoDBi
323029at2759

Database for complete collections of gene phylogenies

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PhylomeDBi
Q10567

TreeFam database of animal gene trees

More...
TreeFami
TF300318

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.10.10, 1 hit
2.60.40.1150, 1 hit
3.30.310.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR026739, AP_beta
IPR016342, AP_complex_bsu_1_2_4
IPR011989, ARM-like
IPR016024, ARM-type_fold
IPR000225, Armadillo
IPR015151, B-adaptin_app_sub_C
IPR002553, Clathrin/coatomer_adapt-like_N
IPR008152, Clathrin_a/b/g-adaptin_app_Ig
IPR013041, Clathrin_app_Ig-like_sf
IPR013037, Clathrin_b-adaptin_app_Ig-like
IPR009028, Coatomer/calthrin_app_sub_C
IPR012295, TBP_dom_sf

The PANTHER Classification System

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PANTHERi
PTHR11134, PTHR11134, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01602, Adaptin_N, 1 hit
PF02883, Alpha_adaptinC2, 1 hit
PF09066, B2-adapt-app_C, 1 hit

PIRSF; a whole-protein classification database

More...
PIRSFi
PIRSF002291, AP_complex_beta, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00809, Alpha_adaptinC2, 1 hit
SM00185, ARM, 2 hits
SM01020, B2-adapt-app_C, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48371, SSF48371, 1 hit
SSF49348, SSF49348, 1 hit
SSF55711, SSF55711, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (4+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 4 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Note: Additional isoforms seem to exist.

This entry has 4 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform A (identifier: Q10567-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MTDSKYFTTT KKGEIFELKA ELNSDKKEKK KEAVKKVIAS MTVGKDVSAL
60 70 80 90 100
FPDVVNCMQT DNLELKKLVY LYLMNYAKSQ PDMAIMAVNT FVKDCEDPNP
110 120 130 140 150
LIRALAVRTM GCIRVDKITE YLCEPLRKCL KDEDPYVRKT AAVCVAKLHD
160 170 180 190 200
INAQLVEDQG FLDTLKDLIS DSNPMVVANA VAALSEIAES HPSSNLLDLN
210 220 230 240 250
PQSINKLLTA LNECTEWGQI FILDCLANYM PKDDREAQSI CERVTPRLSH
260 270 280 290 300
ANSAVVLSAV KVLMKFMEML SKDLDYYGTL LKKLAPPLVT LLSAEPELQY
310 320 330 340 350
VALRNINLIV QKRPEILKHE MKVFFVKYND PIYVKLEKLD IMIRLASQAN
360 370 380 390 400
IAQVLAELKE YATEVDVDFV RKAVRAIGRC AIKVEQSAER CVSTLLDLIQ
410 420 430 440 450
TKVNYVVQEA IVVIKDIFRK YPNKYESVIA TLCENLDSLD EPEARAAMIW
460 470 480 490 500
IVGEYAERID NADELLESFL EGFHDESTQV QLQLLTAIVK LFLKKPTETQ
510 520 530 540 550
ELVQQVLSLA TQDSDNPDLR DRGYIYWRLL STDPVAAKEV VLAEKPLISE
560 570 580 590 600
ETDLIEPTLL DELICYIGTL ASVYHKPPSA FVEGGRGVVH KSLPPRTASS
610 620 630 640 650
ESAESPETAP TGAPPGEQPD VIPAQGDLLG DLLNLDLGPP VSGPPLATSS
660 670 680 690 700
VQMGAVDLLG GGLDSLMGDE PEGIGGTNFV APPTAAVPAN LGAPIGSGLS
710 720 730 740 750
DLFDLTSGVG TLSGSYVAPK AVWLPAMKAK GLEISGTFTR QVGSISMDLQ
760 770 780 790 800
LTNKALQVMT DFAIQFNRNS FGLAPATPLQ VHAPLSPNQT VEISLPLSTV
810 820 830 840 850
GSVMKMEPLN NLQVAVKNNI DVFYFSTLYP LHILFVEDGK MDRQMFLATW
860 870 880 890 900
KDIPNENEAQ FQIRDCPLNA EAASSKLQSS NIFTVAKRNV EGQDMLYQSL
910 920 930 940
KLTNGIWVLA ELRIQPGNPS CTDLELSLKC RAPEVSQHVY QAYETILKN
Length:949
Mass (Da):104,637
Last modified:March 2, 2010 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iFE1BA762F9318585
GO
Isoform B (identifier: Q10567-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     667-673: Missing.

Show »
Length:942
Mass (Da):103,921
Checksum:i2DB97E5FBB283A38
GO
Isoform C (identifier: Q10567-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     667-673: Missing.
     923-925: Missing.

Show »
Length:939
Mass (Da):103,564
Checksum:iD8817293C15BD8E4
GO
Isoform 4 (identifier: Q10567-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     667-673: Missing.
     722-741: Missing.
     923-925: Missing.

Show »
Length:919
Mass (Da):101,348
Checksum:iAC046601DF0170D3
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
C9J1E7C9J1E7_HUMAN
AP-1 complex subunit beta-1
AP1B1
578Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
H7C034H7C034_HUMAN
AP-1 complex subunit beta-1
AP1B1
173Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_083524144C → R in KIDAR. 1 Publication1
Natural variantiVAR_062816777T → A4 PublicationsCorresponds to variant dbSNP:rs2857465Ensembl.1
Natural variantiVAR_083525792 – 949Missing in KIDAR; no protein detected by Western blot in patient cells. 1 PublicationAdd BLAST158

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_000163667 – 673Missing in isoform B, isoform C and isoform 4. 3 Publications7
Alternative sequenceiVSP_044928722 – 741Missing in isoform 4. 1 PublicationAdd BLAST20
Alternative sequenceiVSP_038753923 – 925Missing in isoform C and isoform 4. 2 Publications3

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
L13939 mRNA Translation: AAC98702.1
CT841508 mRNA Translation: CAJ86438.1
AC000041 Genomic DNA No translation available.
AC002059 Genomic DNA No translation available.
BC046242 mRNA Translation: AAH46242.1
U36268 AF379039 Genomic DNA Translation: AAC50684.2
L48038 Genomic DNA No translation available.

The Consensus CDS (CCDS) project

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CCDSi
CCDS13855.1 [Q10567-1]
CCDS13856.2 [Q10567-3]
CCDS54515.1 [Q10567-4]

Protein sequence database of the Protein Information Resource

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PIRi
I54360

NCBI Reference Sequences

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RefSeqi
NP_001118.3, NM_001127.3
NP_001159491.1, NM_001166019.1
NP_663782.2, NM_145730.2

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENST00000317368; ENSP00000319361; ENSG00000100280
ENST00000357586; ENSP00000350199; ENSG00000100280
ENST00000402502; ENSP00000386071; ENSG00000100280
ENST00000405198; ENSP00000384194; ENSG00000100280
ENST00000415447; ENSP00000387612; ENSG00000100280
ENST00000432560; ENSP00000400065; ENSG00000100280

Database of genes from NCBI RefSeq genomes

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GeneIDi
162

KEGG: Kyoto Encyclopedia of Genes and Genomes

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KEGGi
hsa:162

UCSC genome browser

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UCSCi
uc003afi.4, human [Q10567-1]

Keywords - Coding sequence diversityi

Alternative splicing, Polymorphism

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
L13939 mRNA Translation: AAC98702.1
CT841508 mRNA Translation: CAJ86438.1
AC000041 Genomic DNA No translation available.
AC002059 Genomic DNA No translation available.
BC046242 mRNA Translation: AAH46242.1
U36268 AF379039 Genomic DNA Translation: AAC50684.2
L48038 Genomic DNA No translation available.
CCDSiCCDS13855.1 [Q10567-1]
CCDS13856.2 [Q10567-3]
CCDS54515.1 [Q10567-4]
PIRiI54360
RefSeqiNP_001118.3, NM_001127.3
NP_001159491.1, NM_001166019.1
NP_663782.2, NM_145730.2

3D structure databases

Select the link destinations:

Protein Data Bank Europe

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PDBei

Protein Data Bank RCSB

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RCSB PDBi

Protein Data Bank Japan

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PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
4HMYX-ray7.00B1-584[»]
4P6ZX-ray3.00B1-584[»]
6CM9electron microscopy3.73B1-584[»]
6CRIelectron microscopy6.80B/I/J14-583[»]
6D83electron microscopy4.27B1-584[»]
6D84electron microscopy6.72B/F1-584[»]
6DFFelectron microscopy3.90B1-584[»]
SMRiQ10567
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

BioGRIDi106671, 121 interactors
ComplexPortaliCPX-5047, Ubiquitous AP-1 Adaptor complex, sigma1a variant
CPX-5048, Ubiquitous AP-1 Adaptor complex, sigma1b variant
CPX-5049, Ubiquitous AP-1 Adaptor complex, sigma1c variant
CPX-5050, Endothelial AP-1 Adaptor complex, sigma1a variant
CORUMiQ10567
DIPiDIP-24207N
ELMiQ10567
IntActiQ10567, 88 interactors
MINTiQ10567
STRINGi9606.ENSP00000350199

Protein family/group databases

TCDBi9.B.278.1.1, the organellar-targeting adaptor protein complex (o-apc) family

PTM databases

iPTMnetiQ10567
MetOSiteiQ10567
PhosphoSitePlusiQ10567
SwissPalmiQ10567

Polymorphism and mutation databases

BioMutaiAP1B1
DMDMi290457628

Proteomic databases

CPTACiCPTAC-1596
EPDiQ10567
jPOSTiQ10567
MassIVEiQ10567
MaxQBiQ10567
PaxDbiQ10567
PeptideAtlasiQ10567
PRIDEiQ10567
ProteomicsDBi31533
58857 [Q10567-1]
58858 [Q10567-2]
58859 [Q10567-3]

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...
Antibodypediai
10350, 98 antibodies

The DNASU plasmid repository

More...
DNASUi
162

Genome annotation databases

EnsembliENST00000317368; ENSP00000319361; ENSG00000100280
ENST00000357586; ENSP00000350199; ENSG00000100280
ENST00000402502; ENSP00000386071; ENSG00000100280
ENST00000405198; ENSP00000384194; ENSG00000100280
ENST00000415447; ENSP00000387612; ENSG00000100280
ENST00000432560; ENSP00000400065; ENSG00000100280
GeneIDi162
KEGGihsa:162
UCSCiuc003afi.4, human [Q10567-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
162
DisGeNETi162
EuPathDBiHostDB:ENSG00000100280.16

GeneCards: human genes, protein and diseases

More...
GeneCardsi
AP1B1
HGNCiHGNC:554, AP1B1
HPAiENSG00000100280, Low tissue specificity
MIMi242150, phenotype
600157, gene
neXtProtiNX_Q10567
Orphaneti171851, MEDNIK syndrome
PharmGKBiPA24844

GenAtlas: human gene database

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GenAtlasi
Search...

Phylogenomic databases

eggNOGiKOG1061, Eukaryota
HOGENOMiCLU_006320_1_1_1
InParanoidiQ10567
KOiK12392
OrthoDBi323029at2759
PhylomeDBiQ10567
TreeFamiTF300318

Enzyme and pathway databases

PathwayCommonsiQ10567
ReactomeiR-HSA-164940, Nef mediated downregulation of MHC class I complex cell surface expression
R-HSA-2132295, MHC class II antigen presentation
R-HSA-432720, Lysosome Vesicle Biogenesis
R-HSA-432722, Golgi Associated Vesicle Biogenesis
SIGNORiQ10567

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...
BioGRID-ORCSi
162, 14 hits in 871 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
AP1B1, human

The Gene Wiki collection of pages on human genes and proteins

More...
GeneWikii
AP1B1

Database of phenotypes from RNA interference screens in Drosophila and Homo sapiens

More...
GenomeRNAii
162
PharosiQ10567, Tbio

Protein Ontology

More...
PROi
PR:Q10567
RNActiQ10567, protein

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSG00000100280, Expressed in prostate gland and 240 other tissues
ExpressionAtlasiQ10567, baseline and differential
GenevisibleiQ10567, HS

Family and domain databases

Gene3Di1.25.10.10, 1 hit
2.60.40.1150, 1 hit
3.30.310.10, 1 hit
InterProiView protein in InterPro
IPR026739, AP_beta
IPR016342, AP_complex_bsu_1_2_4
IPR011989, ARM-like
IPR016024, ARM-type_fold
IPR000225, Armadillo
IPR015151, B-adaptin_app_sub_C
IPR002553, Clathrin/coatomer_adapt-like_N
IPR008152, Clathrin_a/b/g-adaptin_app_Ig
IPR013041, Clathrin_app_Ig-like_sf
IPR013037, Clathrin_b-adaptin_app_Ig-like
IPR009028, Coatomer/calthrin_app_sub_C
IPR012295, TBP_dom_sf
PANTHERiPTHR11134, PTHR11134, 1 hit
PfamiView protein in Pfam
PF01602, Adaptin_N, 1 hit
PF02883, Alpha_adaptinC2, 1 hit
PF09066, B2-adapt-app_C, 1 hit
PIRSFiPIRSF002291, AP_complex_beta, 1 hit
SMARTiView protein in SMART
SM00809, Alpha_adaptinC2, 1 hit
SM00185, ARM, 2 hits
SM01020, B2-adapt-app_C, 1 hit
SUPFAMiSSF48371, SSF48371, 1 hit
SSF49348, SSF49348, 1 hit
SSF55711, SSF55711, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiAP1B1_HUMAN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q10567
Secondary accession number(s): C9JRD1
, F8WDL0, P78436, Q20WL3, Q86X54
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1996
Last sequence update: March 2, 2010
Last modified: October 7, 2020
This is version 183 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Reference proteome

Documents

  1. Human chromosome 22
    Human chromosome 22: entries, gene names and cross-references to MIM
  2. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  3. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  4. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  5. SIMILARITY comments
    Index of protein domains and families
  6. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
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