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Entry version 137 (02 Jun 2021)
Sequence version 1 (01 Feb 1996)
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Protein

Lid2 complex component snt2

Gene

snt2

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section specifies the position(s) and type(s) of zinc fingers within the protein.<p><a href='/help/zn_fing' target='_top'>More...</a></p>Zinc fingeri241 – 296Phorbol-ester/DAG-typeAdd BLAST56
Zinc fingeri259 – 311PHD-type 1Add BLAST53
Zinc fingeri812 – 896PHD-type 2Add BLAST85
Zinc fingeri904 – 939C2HC pre-PHD-typePROSITE-ProRule annotationAdd BLAST36
Zinc fingeri962 – 1016PHD-type 3; degeneratePROSITE-ProRule annotationAdd BLAST55

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Lid2 complex component snt2
Short name:
Lid2C component snt2
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:snt2
ORF Names:SPAC3H1.12c
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri284812 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002485 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome I

Organism-specific databases

Schizosaccharomyces pombe database

More...
PomBasei
SPAC3H1.12c, snt2

Eukaryotic Pathogen, Vector and Host Database Resources

More...
VEuPathDBi
FungiDB:SPAC3H1.12c

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Nucleus

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000720321 – 1131Lid2 complex component snt2Add BLAST1131

Proteomic databases

MaxQB - The MaxQuant DataBase

More...
MaxQBi
Q10077

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q10077

PRoteomics IDEntifications database

More...
PRIDEi
Q10077

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q10077

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Component of the Lid2 complex composed of ash2, jmj3, lid2, sdc1 and snt2.

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
279863, 118 interactors

STRING: functional protein association networks

More...
STRINGi
4896.SPAC3H1.12c.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini103 – 222BAHPROSITE-ProRule annotationAdd BLAST120

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni375 – 394DisorderedSequence analysisAdd BLAST20

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri241 – 296Phorbol-ester/DAG-typeAdd BLAST56
Zinc fingeri259 – 311PHD-type 1Add BLAST53
Zinc fingeri812 – 896PHD-type 2Add BLAST85
Zinc fingeri904 – 939C2HC pre-PHD-typePROSITE-ProRule annotationAdd BLAST36
Zinc fingeri962 – 1016PHD-type 3; degeneratePROSITE-ProRule annotationAdd BLAST55

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0955, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_001514_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q10077

Identification of Orthologs from Complete Genome Data

More...
OMAi
VWWKAPK

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q10077

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.20.920.10, 1 hit
2.30.30.490, 1 hit
3.30.40.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR001025, BAH_dom
IPR043151, BAH_sf
IPR036427, Bromodomain-like_sf
IPR034732, EPHD
IPR002219, PE/DAG-bd
IPR029617, Snt2
IPR019786, Zinc_finger_PHD-type_CS
IPR011011, Znf_FYVE_PHD
IPR001965, Znf_PHD
IPR019787, Znf_PHD-finger
IPR013083, Znf_RING/FYVE/PHD

The PANTHER Classification System

More...
PANTHERi
PTHR47672, PTHR47672, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01426, BAH, 1 hit
PF00628, PHD, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00439, BAH, 1 hit
SM00109, C1, 1 hit
SM00249, PHD, 2 hits

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF57903, SSF57903, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51038, BAH, 1 hit
PS51805, EPHD, 1 hit
PS01359, ZF_PHD_1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q10077-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MLVIEADSNL LFTAMFDLDK NTNIESNHVK IGNKNTTRRL IIKSSKNSVR
60 70 80 90 100
IAYAPPEKHF VDVTDRFLLP ETETQNLKTR LGIFELEPLP PNGLVCCVLP
110 120 130 140 150
NGELIQPNDF VLVNSPFPGE PFQIARIISF EKSRPCVSTN LYDSVRLNWY
160 170 180 190 200
FRPRDIQRHL TDTRLLFASM HSDIYNIGSV QEKCTVKHRS QIENLDEYKS
210 220 230 240 250
QAKSYYFDRL FDQNINKVFD VVPVTQVKNA PDDVLEDLFK NYDFIVTEYG
260 270 280 290 300
KGRALLNEPS NCKVCKKWCA FDFSVQCADC KKYYHMDCVV PPLLKKPPHG
310 320 330 340 350
FGWTCATCSF ATQRKKSTFQ KENANVDANH ATENNLEGQA TQKSVSILKG
360 370 380 390 400
HNKALSNVSL QEDHGKRRNL KSLRSSRNLH QQSRKSLDEN KPNSFSNVSK
410 420 430 440 450
LKRLPWNMRY LDLKSDLTVE KKSDIYPSRA RISISPMLPT SSEDNLHPLQ
460 470 480 490 500
PLTTADEEMD LDLKSDERFK VDIPTFFERW PFLKDLPLKG YLFPLCEPNL
510 520 530 540 550
QSAMLLVPIT YSDALLDDYL CSCWNLWKKL RLPVSAFVFL ELTITALYET
560 570 580 590 600
KLSPAAAFEK LKSWMPGFGD PKNCTGKRVD EHKINSLVKE FGVSLQCFVE
610 620 630 640 650
KLKFEYSLKE IFFSFLSWAS SPKGLNTFKK LSDSSLSTTT TDSHGLPTCC
660 670 680 690 700
YDIGMYDLQK ILKLKKTPIC RWCHSKRSSE WFVAPPIEES SPKDKSKIVA
710 720 730 740 750
LCQRCGYVWR YYGYPLQQAT PSDLRNCDFE PVKKRKADWD HLSNHDNEVK
760 770 780 790 800
KENNRIRNAS SLMENPRVST KTFDNFTLTH DSTINVKADT VKRARQNNIK
810 820 830 840 850
NKDDVNFSED RKKCCALCGI VGTEGLLVCF KCGTCVHERC YVCDDYAENE
860 870 880 890 900
QMLVSASHLS GRTTRNSASP GIVSGKKSYA KKDQVLSWAC LSCRSNDNLG
910 920 930 940 950
QNNDNHCVLC LQSASHSLMK KTVEGNWVHL ICASWTPDVY VPAEESEPVC
960 970 980 990 1000
GIAQLPPNRW EKKCEVCGNS FGVCVSSPNS GLTSHVTCAE KANWYLGFEF
1010 1020 1030 1040 1050
VKQDQSPFSM LSNLKSLSFF GNVTEINTNK CMINSWTSLR PVLFGPSEQL
1060 1070 1080 1090 1100
PRNFLLRNDI VPNTNNSAWS EYIRNLYPKA YIYLLQYTIA VCKPTIAPTN
1110 1120 1130
VACCCSKCNS TMSPFWWPGN ICQACHCLRV E
Length:1,131
Mass (Da):128,839
Last modified:February 1, 1996 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i44612482C32AF777
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAA92265.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T38744

NCBI Reference Sequences

More...
RefSeqi
NP_593554.1, NM_001018987.2

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
SPAC3H1.12c.1; SPAC3H1.12c.1:pep; SPAC3H1.12c

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
2543443

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
spo:SPAC3H1.12c

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CU329670 Genomic DNA Translation: CAA92265.1
PIRiT38744
RefSeqiNP_593554.1, NM_001018987.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi279863, 118 interactors
STRINGi4896.SPAC3H1.12c.1

PTM databases

iPTMnetiQ10077

Proteomic databases

MaxQBiQ10077
PaxDbiQ10077
PRIDEiQ10077

Genome annotation databases

EnsemblFungiiSPAC3H1.12c.1; SPAC3H1.12c.1:pep; SPAC3H1.12c
GeneIDi2543443
KEGGispo:SPAC3H1.12c

Organism-specific databases

PomBaseiSPAC3H1.12c, snt2
VEuPathDBiFungiDB:SPAC3H1.12c

Phylogenomic databases

eggNOGiKOG0955, Eukaryota
HOGENOMiCLU_001514_0_0_1
InParanoidiQ10077
OMAiVWWKAPK
PhylomeDBiQ10077

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q10077

Family and domain databases

Gene3Di1.20.920.10, 1 hit
2.30.30.490, 1 hit
3.30.40.10, 1 hit
InterProiView protein in InterPro
IPR001025, BAH_dom
IPR043151, BAH_sf
IPR036427, Bromodomain-like_sf
IPR034732, EPHD
IPR002219, PE/DAG-bd
IPR029617, Snt2
IPR019786, Zinc_finger_PHD-type_CS
IPR011011, Znf_FYVE_PHD
IPR001965, Znf_PHD
IPR019787, Znf_PHD-finger
IPR013083, Znf_RING/FYVE/PHD
PANTHERiPTHR47672, PTHR47672, 1 hit
PfamiView protein in Pfam
PF01426, BAH, 1 hit
PF00628, PHD, 1 hit
SMARTiView protein in SMART
SM00439, BAH, 1 hit
SM00109, C1, 1 hit
SM00249, PHD, 2 hits
SUPFAMiSSF57903, SSF57903, 1 hit
PROSITEiView protein in PROSITE
PS51038, BAH, 1 hit
PS51805, EPHD, 1 hit
PS01359, ZF_PHD_1, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiSNT2_SCHPO
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q10077
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: February 1, 1996
Last modified: June 2, 2021
This is version 137 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
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