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Protein

Pentatricopeptide repeat-containing protein At3g51320

Gene

At3g51320

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At3g51320
Gene namesi
Ordered Locus Names:At3g51320
ORF Names:F24M12.360
OrganismiArabidopsis thaliana (Mouse-ear cress)
Taxonomic identifieri3702 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
Proteomesi
  • UP000006548 Componenti: Chromosome 3

Organism-specific databases

AraportiAT3G51320
TAIRilocus:2080898 AT3G51320

Subcellular locationi

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00003561371 – 530Pentatricopeptide repeat-containing protein At3g51320Add BLAST530

Proteomic databases

PaxDbiQ0WVU0
PRIDEiQ0WVU0

Expressioni

Gene expression databases

ExpressionAtlasiQ0WVU0 baseline and differential
GenevisibleiQ0WVU0 AT

Interactioni

Protein-protein interaction databases

STRINGi3702.AT3G51320.1

Structurei

3D structure databases

ProteinModelPortaliQ0WVU0
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Repeati82 – 116PPR 1Add BLAST35
Repeati117 – 151PPR 2Add BLAST35
Repeati152 – 182PPR 3Add BLAST31
Repeati183 – 217PPR 4Add BLAST35
Repeati218 – 248PPR 5Add BLAST31
Repeati249 – 283PPR 6Add BLAST35
Repeati284 – 314PPR 7Add BLAST31
Repeati315 – 349PPR 8Add BLAST35
Repeati350 – 380PPR 9Add BLAST31
Repeati386 – 420PPR 10Add BLAST35

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni424 – 499Type E motifAdd BLAST76

Sequence similaritiesi

Belongs to the PPR family. PCMP-E subfamily.Curated

Keywords - Domaini

Repeat

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000115632
InParanoidiQ0WVU0
OMAiVMILAHC
OrthoDBiEOG09360C3H
PhylomeDBiQ0WVU0

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 2 hits
TIGRFAMsiTIGR00756 PPR, 3 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 11 hits

Sequencei

Sequence statusi: Complete.

Q0WVU0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAKASSIRQF VTSRFIVPGT GLLKGFKLVE DSNSITHLFQ VHARLITSGN
60 70 80 90 100
FWDSSWAIRL LKSSSRFGDS SYTVSIYRSI GKLYCANPVF KAYLVSSSPK
110 120 130 140 150
QALGFYFDIL RFGFVPDSYT FVSLISCIEK TCCVDSGKMC HGQAIKHGCD
160 170 180 190 200
QVLPVQNSLM HMYTCCGALD LAKKLFVEIP KRDIVSWNSI IAGMVRNGDV
210 220 230 240 250
LAAHKLFDEM PDKNIISWNI MISAYLGANN PGVSISLFRE MVRAGFQGNE
260 270 280 290 300
STLVLLLNAC GRSARLKEGR SVHASLIRTF LNSSVVIDTA LIDMYGKCKE
310 320 330 340 350
VGLARRIFDS LSIRNKVTWN VMILAHCLHG RPEGGLELFE AMINGMLRPD
360 370 380 390 400
EVTFVGVLCG CARAGLVSQG QSYYSLMVDE FQIKPNFGHQ WCMANLYSSA
410 420 430 440 450
GFPEEAEEAL KNLPDEDVTP ESTKWANLLS SSRFTGNPTL GESIAKSLIE
460 470 480 490 500
TDPLNYKYYH LLMNIYSVTG RWEDVNRVRE MVKERKIGRI PGCGLVDLKE
510 520 530
IVHGLRLGCK EAEKVFTETS LEKCYSDSPS
Length:530
Mass (Da):58,985
Last modified:September 5, 2006 - v1
Checksum:i7AFFABF17846EAA1
GO

Sequence cautioni

The sequence CAB62654 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132980 Genomic DNA Translation: CAB62654.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE78778.1
AK226647 mRNA Translation: BAE98758.1
PIRiT45763
RefSeqiNP_190700.2, NM_114991.3
UniGeneiAt.53887

Genome annotation databases

EnsemblPlantsiAT3G51320.1; AT3G51320.1; AT3G51320
GeneIDi824295
GrameneiAT3G51320.1; AT3G51320.1; AT3G51320
KEGGiath:AT3G51320

Similar proteinsi

Cross-referencesi

Web resourcesi

Arabidopsis PPR Protein Database

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AL132980 Genomic DNA Translation: CAB62654.1 Sequence problems.
CP002686 Genomic DNA Translation: AEE78778.1
AK226647 mRNA Translation: BAE98758.1
PIRiT45763
RefSeqiNP_190700.2, NM_114991.3
UniGeneiAt.53887

3D structure databases

ProteinModelPortaliQ0WVU0
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi3702.AT3G51320.1

Proteomic databases

PaxDbiQ0WVU0
PRIDEiQ0WVU0

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiAT3G51320.1; AT3G51320.1; AT3G51320
GeneIDi824295
GrameneiAT3G51320.1; AT3G51320.1; AT3G51320
KEGGiath:AT3G51320

Organism-specific databases

AraportiAT3G51320
TAIRilocus:2080898 AT3G51320

Phylogenomic databases

eggNOGiKOG4197 Eukaryota
ENOG410Z7Z7 LUCA
HOGENOMiHOG000115632
InParanoidiQ0WVU0
OMAiVMILAHC
OrthoDBiEOG09360C3H
PhylomeDBiQ0WVU0

Miscellaneous databases

PROiPR:Q0WVU0

Gene expression databases

ExpressionAtlasiQ0WVU0 baseline and differential
GenevisibleiQ0WVU0 AT

Family and domain databases

Gene3Di1.25.40.10, 3 hits
InterProiView protein in InterPro
IPR002885 Pentatricopeptide_repeat
IPR011990 TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF12854 PPR_1, 1 hit
PF13041 PPR_2, 2 hits
TIGRFAMsiTIGR00756 PPR, 3 hits
PROSITEiView protein in PROSITE
PS51375 PPR, 11 hits
ProtoNetiSearch...

Entry informationi

Entry nameiPP278_ARATH
AccessioniPrimary (citable) accession number: Q0WVU0
Secondary accession number(s): Q9SD17
Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 16, 2008
Last sequence update: September 5, 2006
Last modified: October 10, 2018
This is version 73 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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Main funding by: National Institutes of Health

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