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Entry version 101 (16 Oct 2019)
Sequence version 1 (05 Sep 2006)
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Protein
Submitted name:

Nucleolar protein

Gene

At1g63810

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Unreviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionRNA-bindingUniRule annotation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Nucleolar proteinImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At1g63810Imported
ORF Names:T12P18.17Imported, T12P18_17Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

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Araporti
AT1G63810

The Arabidopsis Information Resource

More...
TAIRi
locus:2195523 AT1G63810

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

NucleusUniRule annotation

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Proteomic databases

PRoteomics IDEntifications database

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PRIDEi
Q0WVM5

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q0WVM5

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q0WVM5 baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
3702.AT1G63810.1

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family_and_domains_section">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini98 – 232NrapInterPro annotationAdd BLAST135
Domaini237 – 378Nrap_D2InterPro annotationAdd BLAST142
Domaini383 – 537Nrap_D3InterPro annotationAdd BLAST155
Domaini563 – 737Nrap_D4InterPro annotationAdd BLAST175
Domaini740 – 903Nrap_D5InterPro annotationAdd BLAST164
Domaini906 – 1044Nrap_D6InterPro annotationAdd BLAST139

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni1008 – 1028DisorderedSequence analysisAdd BLAST21

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the NRAP family.UniRule annotation

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2054 Eukaryota
ENOG410XPP9 LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000030035

KEGG Orthology (KO)

More...
KOi
K14544

Identification of Orthologs from Complete Genome Data

More...
OMAi
VWNQLAN

Database of Orthologous Groups

More...
OrthoDBi
176625at2759

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR005554 NOL6/Upt22
IPR035082 Nrap_D1
IPR035367 Nrap_D2
IPR035368 Nrap_D3
IPR035369 Nrap_D4
IPR035370 Nrap_D5
IPR035371 Nrap_D6

The PANTHER Classification System

More...
PANTHERi
PTHR17972 PTHR17972, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF03813 Nrap, 1 hit
PF17403 Nrap_D2, 1 hit
PF17404 Nrap_D3, 1 hit
PF17405 Nrap_D4, 1 hit
PF17406 Nrap_D5, 1 hit
PF17407 Nrap_D6, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q0WVM5-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEADTKTDSR TLKVNDLLKD ARLDYDSLRK LVDDTVSSIK EAIDGIPEKF
60 70 80 90 100
QVTSELAPSF VEDIGADKEV EFSFKKPNGF NLCGSYSICG MAKPDTSVDL
110 120 130 140 150
LVHLPKECFY EKDYMNHRYH AKRCLYLCVI EKHLLSSSSI EKVVWSTLHN
160 170 180 190 200
EARKPVLVVF PAKKLDQFPG FSIRLIPSAT SLFSVAKLSI SRNNVRSVTA
210 220 230 240 250
DGVPEPTPTY NSSILEDMFL EENSEFLKKT FSEWKELSDA LILLKIWARQ
260 270 280 290 300
RSSIYVHDCL NGFLISVILS YLATHSKINK ALSALDIFRV TLDFIATSKL
310 320 330 340 350
WERGLYLPPQ SEIRVSKEEK MQFRELFPVV ICDSSTFVNL AFRMTSVGFL
360 370 380 390 400
ELQDEASLTL KCMEKLRDGG FEEIFMTKID YPVKYDHCIR LQLKGKTAVS
410 420 430 440 450
LSGFCLDKEC WRLYEQKVHS LLLEGLGDRA KSIRVVWRNT NQDWHVESGL
460 470 480 490 500
SVLDREPLFI GISVSSTEKA YRTVDIGPDA ENKIEALRFR KFWGEKSDLR
510 520 530 540 550
RFKDGRISES TVWETQQWTK HLIMKQIVEY ILKRHLSLTS DDIVQLVDQL
560 570 580 590 600
DFSLNYGGKD PISLSGNLVQ AYEVLSKCLR EIEGIPLKVS SVQSLDSALR
610 620 630 640 650
FTSVFPPEPH PVACEKIDSR RLQKLIPSCI PAMEVMIQLE GSGNWPMDDL
660 670 680 690 700
AVEKTKSAFL LKIAESLQNV KGIPCTATED NVDVFIGGYA FRLRILHERG
710 720 730 740 750
LSLVKREIGV DPVKHVSSTD KMLFIRSQHA SMINGLQGRF PVYAPVARLA
760 770 780 790 800
KRWVSAHLFS GCLAEEAIEL LVAYLFLTPL PLGVPSSRIN GFLRFLRLLA
810 820 830 840 850
DYEWMFYPLI VDINNDFGRN DEKEINDNFM SSRKGYEEDK QNISSAMFLA
860 870 880 890 900
APYDKASEAW TSTSPNLLEQ KRLVAYARSS ANVLSKMVLQ EHNDSVQWEC
910 920 930 940 950
LFRTPLNNYD AVILLHRDKL PYPRRLLFPS ELNQGKHVAR GKASRLFNPF
960 970 980 990 1000
MSPGDLKRSH EELKNKLMVD FEPTKCLLSG LQEEFGTLKP WYDHIGGDAI
1010 1020 1030 1040 1050
GLTWNKHNSK KRERDEEEEE EEESNPMEML KAVGEMGKGL VRDIYLLKPP

RFV
Length:1,053
Mass (Da):120,150
Last modified:September 5, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i592AF0D7B517914C
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP002684 Genomic DNA Translation: AEE34150.1
CP002684 Genomic DNA Translation: ANM57714.1
AK226717 mRNA Translation: BAE98823.1

NCBI Reference Sequences

More...
RefSeqi
NP_001320199.1, NM_001334128.1
NP_176566.3, NM_105056.4

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G63810.1; AT1G63810.1; AT1G63810
AT1G63810.2; AT1G63810.2; AT1G63810

Database of genes from NCBI RefSeq genomes

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GeneIDi
842684

Gramene; a comparative resource for plants

More...
Gramenei
AT1G63810.1; AT1G63810.1; AT1G63810
AT1G63810.2; AT1G63810.2; AT1G63810

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G63810

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP002684 Genomic DNA Translation: AEE34150.1
CP002684 Genomic DNA Translation: ANM57714.1
AK226717 mRNA Translation: BAE98823.1
RefSeqiNP_001320199.1, NM_001334128.1
NP_176566.3, NM_105056.4

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

STRINGi3702.AT1G63810.1

PTM databases

iPTMnetiQ0WVM5

Proteomic databases

PRIDEiQ0WVM5

Genome annotation databases

EnsemblPlantsiAT1G63810.1; AT1G63810.1; AT1G63810
AT1G63810.2; AT1G63810.2; AT1G63810
GeneIDi842684
GrameneiAT1G63810.1; AT1G63810.1; AT1G63810
AT1G63810.2; AT1G63810.2; AT1G63810
KEGGiath:AT1G63810

Organism-specific databases

AraportiAT1G63810
TAIRilocus:2195523 AT1G63810

Phylogenomic databases

eggNOGiKOG2054 Eukaryota
ENOG410XPP9 LUCA
HOGENOMiHOG000030035
KOiK14544
OMAiVWNQLAN
OrthoDBi176625at2759

Gene expression databases

ExpressionAtlasiQ0WVM5 baseline and differential

Family and domain databases

InterProiView protein in InterPro
IPR005554 NOL6/Upt22
IPR035082 Nrap_D1
IPR035367 Nrap_D2
IPR035368 Nrap_D3
IPR035369 Nrap_D4
IPR035370 Nrap_D5
IPR035371 Nrap_D6
PANTHERiPTHR17972 PTHR17972, 1 hit
PfamiView protein in Pfam
PF03813 Nrap, 1 hit
PF17403 Nrap_D2, 1 hit
PF17404 Nrap_D3, 1 hit
PF17405 Nrap_D4, 1 hit
PF17406 Nrap_D5, 1 hit
PF17407 Nrap_D6, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ0WVM5_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q0WVM5
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: September 5, 2006
Last sequence update: September 5, 2006
Last modified: October 16, 2019
This is version 101 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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