Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Entry version 88 (12 Aug 2020)
Sequence version 1 (05 Sep 2006)
Previous versions | rss
Add a publicationFeedback
Protein

Pentatricopeptide repeat-containing protein At1g05670, mitochondrial

Gene

At1g05670

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Protein family/group databases

Carbohydrate-Active enZymes

More...
CAZyi
GT1, Glycosyltransferase Family 1

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Pentatricopeptide repeat-containing protein At1g05670, mitochondrial
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Ordered Locus Names:At1g05670
ORF Names:F3F20.12
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 1

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT1G05670

The Arabidopsis Information Resource

More...
TAIRi
locus:2031973, AT1G05670

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Mitochondrion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a transit peptide.<p><a href='/help/transit' target='_top'>More...</a></p>Transit peptidei1 – 21MitochondrionSequence analysisAdd BLAST21
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_000034275322 – 741Pentatricopeptide repeat-containing protein At1g05670, mitochondrialAdd BLAST720

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q0WVK7

PRoteomics IDEntifications database

More...
PRIDEi
Q0WVK7

ProteomicsDB: a multi-organism proteome resource

More...
ProteomicsDBi
226333

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q0WVK7

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q0WVK7, baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q0WVK7, AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
22316, 1 interactor

STRING: functional protein association networks

More...
STRINGi
3702.AT1G05670.2

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q0WVK7

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati174 – 208PPR 1Add BLAST35
Repeati209 – 244PPR 2Add BLAST36
Repeati245 – 279PPR 3Add BLAST35
Repeati280 – 314PPR 4Add BLAST35
Repeati315 – 349PPR 5Add BLAST35
Repeati350 – 384PPR 6Add BLAST35
Repeati385 – 419PPR 7Add BLAST35
Repeati420 – 454PPR 8Add BLAST35
Repeati455 – 489PPR 9Add BLAST35
Repeati490 – 524PPR 10Add BLAST35
Repeati525 – 559PPR 11Add BLAST35
Repeati560 – 594PPR 12Add BLAST35
Repeati595 – 629PPR 13Add BLAST35
Repeati630 – 664PPR 14Add BLAST35
Repeati665 – 699PPR 15Add BLAST35

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the PPR family. P subfamily.Curated

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG4197, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_002706_49_12_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q0WVK7

Identification of Orthologs from Complete Genome Data

More...
OMAi
VEQFIST

Database of Orthologous Groups

More...
OrthoDBi
1344243at2759

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.40.10, 5 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR002885, Pentatricopeptide_repeat
IPR011990, TPR-like_helical_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF01535, PPR, 3 hits
PF12854, PPR_1, 1 hit
PF13041, PPR_2, 5 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR00756, PPR, 13 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51375, PPR, 14 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q0WVK7-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MKKPFTGLLM KRGTLSSFRN FIQLFSLQSR GLSFSTLTDT RPFPDYSPKK
60 70 80 90 100
ASVRDTEFVH QITNVIKLRR AEPLRRSLKP YECKFKTDHL IWVLMKIKCD
110 120 130 140 150
YRLVLDFFDW ARSRRDSNLE SLCIVIHLAV ASKDLKVAQS LISSFWERPK
160 170 180 190 200
LNVTDSFVQF FDLLVYTYKD WGSDPRVFDV FFQVLVDFGL LREARRVFEK
210 220 230 240 250
MLNYGLVLSV DSCNVYLTRL SKDCYKTATA IIVFREFPEV GVCWNVASYN
260 270 280 290 300
IVIHFVCQLG RIKEAHHLLL LMELKGYTPD VISYSTVVNG YCRFGELDKV
310 320 330 340 350
WKLIEVMKRK GLKPNSYIYG SIIGLLCRIC KLAEAEEAFS EMIRQGILPD
360 370 380 390 400
TVVYTTLIDG FCKRGDIRAA SKFFYEMHSR DITPDVLTYT AIISGFCQIG
410 420 430 440 450
DMVEAGKLFH EMFCKGLEPD SVTFTELING YCKAGHMKDA FRVHNHMIQA
460 470 480 490 500
GCSPNVVTYT TLIDGLCKEG DLDSANELLH EMWKIGLQPN IFTYNSIVNG
510 520 530 540 550
LCKSGNIEEA VKLVGEFEAA GLNADTVTYT TLMDAYCKSG EMDKAQEILK
560 570 580 590 600
EMLGKGLQPT IVTFNVLMNG FCLHGMLEDG EKLLNWMLAK GIAPNATTFN
610 620 630 640 650
SLVKQYCIRN NLKAATAIYK DMCSRGVGPD GKTYENLVKG HCKARNMKEA
660 670 680 690 700
WFLFQEMKGK GFSVSVSTYS VLIKGFLKRK KFLEAREVFD QMRREGLAAD
710 720 730 740
KEIFDFFSDT KYKGKRPDTI VDPIDEIIEN YLVDEQLRGA N
Length:741
Mass (Da):84,552
Last modified:September 5, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i3895C4D649F23E5A
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAD30619 differs from that shown. Reason: Erroneous gene model prediction. The predicted gene has been split into 2 genes: At1g05670 and At1g05675.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC007153 Genomic DNA Translation: AAD30619.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE27873.1
CP002684 Genomic DNA Translation: AEE27874.1
CP002684 Genomic DNA Translation: ANM59910.1
AK226740 mRNA Translation: BAE98841.1

Protein sequence database of the Protein Information Resource

More...
PIRi
H86190

NCBI Reference Sequences

More...
RefSeqi
NP_001154307.2, NM_001160835.3
NP_001318929.1, NM_001331562.1
NP_172058.2, NM_100447.7

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT1G05670.1; AT1G05670.1; AT1G05670
AT1G05670.2; AT1G05670.2; AT1G05670
AT1G05670.3; AT1G05670.3; AT1G05670

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
837074

Gramene; a comparative resource for plants

More...
Gramenei
AT1G05670.1; AT1G05670.1; AT1G05670
AT1G05670.2; AT1G05670.2; AT1G05670
AT1G05670.3; AT1G05670.3; AT1G05670

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT1G05670

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

<p>This subsection of the <a href="http://www.uniprot.org/manual/cross%5Freferences%5Fsection">Cross-references</a> section provides links to various web resources that are relevant for a specific protein.<p><a href='/help/web_resource' target='_top'>More...</a></p>Web resourcesi

Pentatricopeptide repeat proteins

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC007153 Genomic DNA Translation: AAD30619.1 Sequence problems.
CP002684 Genomic DNA Translation: AEE27873.1
CP002684 Genomic DNA Translation: AEE27874.1
CP002684 Genomic DNA Translation: ANM59910.1
AK226740 mRNA Translation: BAE98841.1
PIRiH86190
RefSeqiNP_001154307.2, NM_001160835.3
NP_001318929.1, NM_001331562.1
NP_172058.2, NM_100447.7

3D structure databases

SMRiQ0WVK7
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi22316, 1 interactor
STRINGi3702.AT1G05670.2

Protein family/group databases

CAZyiGT1, Glycosyltransferase Family 1

PTM databases

iPTMnetiQ0WVK7

Proteomic databases

PaxDbiQ0WVK7
PRIDEiQ0WVK7
ProteomicsDBi226333

Genome annotation databases

EnsemblPlantsiAT1G05670.1; AT1G05670.1; AT1G05670
AT1G05670.2; AT1G05670.2; AT1G05670
AT1G05670.3; AT1G05670.3; AT1G05670
GeneIDi837074
GrameneiAT1G05670.1; AT1G05670.1; AT1G05670
AT1G05670.2; AT1G05670.2; AT1G05670
AT1G05670.3; AT1G05670.3; AT1G05670
KEGGiath:AT1G05670

Organism-specific databases

AraportiAT1G05670
TAIRilocus:2031973, AT1G05670

Phylogenomic databases

eggNOGiKOG4197, Eukaryota
HOGENOMiCLU_002706_49_12_1
InParanoidiQ0WVK7
OMAiVEQFIST
OrthoDBi1344243at2759

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q0WVK7

Gene expression databases

ExpressionAtlasiQ0WVK7, baseline and differential
GenevisibleiQ0WVK7, AT

Family and domain databases

Gene3Di1.25.40.10, 5 hits
InterProiView protein in InterPro
IPR002885, Pentatricopeptide_repeat
IPR011990, TPR-like_helical_dom_sf
PfamiView protein in Pfam
PF01535, PPR, 3 hits
PF12854, PPR_1, 1 hit
PF13041, PPR_2, 5 hits
TIGRFAMsiTIGR00756, PPR, 13 hits
PROSITEiView protein in PROSITE
PS51375, PPR, 14 hits

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPPR12_ARATH
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q0WVK7
Secondary accession number(s): Q9SYK8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 2008
Last sequence update: September 5, 2006
Last modified: August 12, 2020
This is version 88 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again