Skip Header

You are using a version of browser that may not display all the features of this website. Please consider upgrading your browser.
Protein

Protein LSM12 homolog

Gene

LSM12

Organism
Bos taurus (Bovine)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

GO - Biological processi

  • RNA metabolic process Source: GO_Central

Names & Taxonomyi

Protein namesi
Recommended name:
Protein LSM12 homolog
Gene namesi
Name:LSM12
OrganismiBos taurus (Bovine)
Taxonomic identifieri9913 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaLaurasiatheriaCetartiodactylaRuminantiaPecoraBovidaeBovinaeBos
Proteomesi
  • UP000009136 Componenti: Chromosome 19

Organism-specific databases

VGNCiVGNC:31052 LSM12

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00003051252 – 195Protein LSM12 homologAdd BLAST194

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei2N-acetylalanineBy similarity1
Modified residuei75PhosphothreonineBy similarity1

Keywords - PTMi

Acetylation, Phosphoprotein

Proteomic databases

PaxDbiQ0VCF9
PRIDEiQ0VCF9

Expressioni

Gene expression databases

BgeeiENSBTAG00000016252 Expressed in 10 organ(s), highest expression level in skeletal muscle tissue

Interactioni

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000021620

Structurei

3D structure databases

ProteinModelPortaliQ0VCF9
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the LSM12 family.Curated

Phylogenomic databases

eggNOGiKOG4401 Eukaryota
ENOG410Y6A1 LUCA
GeneTreeiENSGT00390000006956
HOGENOMiHOG000006611
HOVERGENiHBG057351
InParanoidiQ0VCF9
OMAiWEGANIR
OrthoDBiEOG091G0RRA
TreeFamiTF324296

Family and domain databases

InterProiView protein in InterPro
IPR019181 Anticodon-binding_dom
IPR039683 Lsm12-like
PANTHERiPTHR13542 PTHR13542, 1 hit
PfamiView protein in Pfam
PF09793 AD, 1 hit
SMARTiView protein in SMART
SM00995 AD, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q0VCF9-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAAPPGEYFS VGSQVSCRTC QEQRLQGEVV AFDYQSKMLA LKCPSSSGKP
60 70 80 90 100
NHADILLINL QYVSEVEIIN DRTETPPPLA SLNVSKLASK ARTEKEEKLS
110 120 130 140 150
QAYAISAGVS LEGQQLFQTI HKTIKDCKWQ EKNIVVMEEV VITPPYQVEN
160 170 180 190
CKGKEGSALS HVRKIVEKHF RDVESQKILQ RSQAQQPQKE AALSS
Length:195
Mass (Da):21,701
Last modified:October 2, 2007 - v2
Checksum:iBCEDE62DA43D86C7
GO

Sequence cautioni

The sequence AAI20191 differs from that shown. Reason: Erroneous termination at position 101. Translated as Gln.Curated

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC120190 mRNA Translation: AAI20191.1 Sequence problems.
RefSeqiNP_001069566.2, NM_001076098.2
UniGeneiBt.102061
Bt.59335
Bt.88361

Genome annotation databases

EnsembliENSBTAT00000021620; ENSBTAP00000021620; ENSBTAG00000016252
GeneIDi538005
KEGGibta:538005

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BC120190 mRNA Translation: AAI20191.1 Sequence problems.
RefSeqiNP_001069566.2, NM_001076098.2
UniGeneiBt.102061
Bt.59335
Bt.88361

3D structure databases

ProteinModelPortaliQ0VCF9
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi9913.ENSBTAP00000021620

Proteomic databases

PaxDbiQ0VCF9
PRIDEiQ0VCF9

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENSBTAT00000021620; ENSBTAP00000021620; ENSBTAG00000016252
GeneIDi538005
KEGGibta:538005

Organism-specific databases

CTDi124801
VGNCiVGNC:31052 LSM12

Phylogenomic databases

eggNOGiKOG4401 Eukaryota
ENOG410Y6A1 LUCA
GeneTreeiENSGT00390000006956
HOGENOMiHOG000006611
HOVERGENiHBG057351
InParanoidiQ0VCF9
OMAiWEGANIR
OrthoDBiEOG091G0RRA
TreeFamiTF324296

Gene expression databases

BgeeiENSBTAG00000016252 Expressed in 10 organ(s), highest expression level in skeletal muscle tissue

Family and domain databases

InterProiView protein in InterPro
IPR019181 Anticodon-binding_dom
IPR039683 Lsm12-like
PANTHERiPTHR13542 PTHR13542, 1 hit
PfamiView protein in Pfam
PF09793 AD, 1 hit
SMARTiView protein in SMART
SM00995 AD, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiLSM12_BOVIN
AccessioniPrimary (citable) accession number: Q0VCF9
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 2, 2007
Last sequence update: October 2, 2007
Last modified: November 7, 2018
This is version 63 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

We'd like to inform you that we have updated our Privacy Notice to comply with Europe’s new General Data Protection Regulation (GDPR) that applies since 25 May 2018.

Do not show this banner again