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Protein

50S ribosomal protein L13

Gene

rplM

Organism
Borrelia afzelii (strain PKo)
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly.UniRule annotation

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Names & Taxonomyi

Protein namesi
Recommended name:
50S ribosomal protein L13UniRule annotation
Gene namesi
Name:rplMUniRule annotation
Ordered Locus Names:BAPKO_0348, BafPKo_0339
OrganismiBorrelia afzelii (strain PKo)
Taxonomic identifieri390236 [NCBI]
Taxonomic lineageiBacteriaSpirochaetesSpirochaetalesBorreliaceaeBorreliella
Proteomesi
  • UP000005216 Componenti: Chromosome

Subcellular locationi

GO - Cellular componenti

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_10000553481 – 15250S ribosomal protein L13Add BLAST152

Proteomic databases

PRIDEiQ0SNH3

Interactioni

Subunit structurei

Part of the 50S ribosomal subunit.UniRule annotation

Protein-protein interaction databases

STRINGi390236.BAPKO_0348

Structurei

3D structure databases

ProteinModelPortaliQ0SNH3
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Belongs to the universal ribosomal protein uL13 family.UniRule annotation

Phylogenomic databases

eggNOGiENOG4108UM5 Bacteria
COG0102 LUCA
HOGENOMiHOG000225286
KOiK02871
OMAiVLMGKHK
OrthoDBiPOG091H013T

Family and domain databases

CDDicd00392 Ribosomal_L13, 1 hit
Gene3Di3.90.1180.10, 1 hit
HAMAPiMF_01366 Ribosomal_L13, 1 hit
InterProiView protein in InterPro
IPR005822 Ribosomal_L13
IPR005823 Ribosomal_L13_bac-type
IPR023563 Ribosomal_L13_CS
IPR036899 Ribosomal_L13_sf
PANTHERiPTHR11545 PTHR11545, 1 hit
PfamiView protein in Pfam
PF00572 Ribosomal_L13, 1 hit
PIRSFiPIRSF002181 Ribosomal_L13, 1 hit
SUPFAMiSSF52161 SSF52161, 1 hit
TIGRFAMsiTIGR01066 rplM_bact, 1 hit
PROSITEiView protein in PROSITE
PS00783 RIBOSOMAL_L13, 1 hit

Sequencei

Sequence statusi: Complete.

Q0SNH3-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MNKITNNVTI WIKPKTVEKK WYVIDAADRV LGKVAVDVVR ILRGKHKAYY
60 70 80 90 100
TPHQDLGDNV IVINASKVRL TGKKYQQKLY YRHSRYPGGL YSDTFRTLSE
110 120 130 140 150
RKPCAPLEIA IKGMLPKGPL GRGLFRNLKV FSGSEHTLKA QNPVKLEANL

ER
Length:152
Mass (Da):17,347
Last modified:September 5, 2006 - v1
Checksum:iE794887603C07FDA
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000395 Genomic DNA Translation: ABH01605.1
CP002933 Genomic DNA Translation: AEL69565.1
RefSeqiWP_004790698.1, NC_017238.1

Genome annotation databases

EnsemblBacteriaiABH01605; ABH01605; BAPKO_0348
AEL69565; AEL69565; BafPKo_0339
KEGGibaf:BAPKO_0348
bafz:BafPKo_0339
PATRICifig|390236.22.peg.332

Similar proteinsi

Entry informationi

Entry nameiRL13_BORAP
AccessioniPrimary (citable) accession number: Q0SNH3
Secondary accession number(s): G0IRQ5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: September 5, 2006
Last modified: October 25, 2017
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome

Documents

  1. Ribosomal proteins
    Ribosomal proteins families and list of entries
  2. SIMILARITY comments
    Index of protein domains and families

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