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Entry version 89 (12 Aug 2020)
Sequence version 2 (08 Feb 2011)
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Protein

Leucine-rich repeat and IQ domain-containing protein 1

Gene

Lrriq1

Organism
Mus musculus (Mouse)
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at transcript leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Leucine-rich repeat and IQ domain-containing protein 1
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:Lrriq1
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiMus musculus (Mouse)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri10090 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresGliresRodentiaMyomorphaMuroideaMuridaeMurinaeMusMus
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000589 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 10

Organism-specific databases

Mouse genome database (MGD) from Mouse Genome Informatics (MGI)

More...
MGIi
MGI:1922228, Lrriq1

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003136261 – 1673Leucine-rich repeat and IQ domain-containing protein 1Add BLAST1673

Proteomic databases

jPOST - Japan Proteome Standard Repository/Database

More...
jPOSTi
Q0P5X1

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q0P5X1

PeptideAtlas

More...
PeptideAtlasi
Q0P5X1

PRoteomics IDEntifications database

More...
PRIDEi
Q0P5X1

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q0P5X1

Comprehensive resource for the study of protein post-translational modifications (PTMs) in human, mouse and rat.

More...
PhosphoSitePlusi
Q0P5X1

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
ENSMUSG00000019892, Expressed in spermatid and 39 other tissues

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
217124, 2 interactors

STRING: functional protein association networks

More...
STRINGi
10090.ENSMUSP00000020043

Miscellaneous databases

RNAct, Protein-RNA interaction predictions for model organisms.

More...
RNActi
Q0P5X1, protein

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati34 – 59LRR 1Add BLAST26
Repeati216 – 239LRR 2Add BLAST24
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini291 – 320IQ 1PROSITE-ProRule annotationAdd BLAST30
Repeati491 – 516LRR 3Add BLAST26
Repeati641 – 665LRR 4Add BLAST25
Repeati830 – 852LRR 5Add BLAST23
Repeati853 – 873LRR 6Add BLAST21
Repeati874 – 894LRR 7Add BLAST21
Repeati895 – 919LRR 8Add BLAST25
Repeati921 – 939LRR 9Add BLAST19
Repeati940 – 961LRR 10Add BLAST22
Repeati962 – 983LRR 11Add BLAST22
Repeati984 – 1005LRR 12Add BLAST22
Repeati1007 – 1029LRR 13Add BLAST23
Repeati1030 – 1054LRR 14Add BLAST25
Repeati1067 – 1090LRR 15Add BLAST24
Domaini1280 – 1309IQ 2PROSITE-ProRule annotationAdd BLAST30
Domaini1340 – 1369IQ 3PROSITE-ProRule annotationAdd BLAST30
Repeati1378 – 1405LRR 16Add BLAST28

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Leucine-rich repeat, Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0531, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000162858

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_002837_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q0P5X1

Identification of Orthologs from Complete Genome Data

More...
OMAi
THAPACK

Database of Orthologous Groups

More...
OrthoDBi
433355at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q0P5X1

TreeFam database of animal gene trees

More...
TreeFami
TF333460

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.80.10.10, 2 hits

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR000048, IQ_motif_EF-hand-BS
IPR001611, Leu-rich_rpt
IPR003591, Leu-rich_rpt_typical-subtyp
IPR032675, LRR_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF00612, IQ, 2 hits
PF13855, LRR_8, 2 hits

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00015, IQ, 3 hits
SM00369, LRR_TYP, 4 hits

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50096, IQ, 3 hits
PS51450, LRR, 10 hits

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (2+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 2 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 2 potential isoforms that are computationally mapped.Show allAlign All

Isoform 1 (identifier: Q0P5X1-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MEDSDDSEAK LREEIEAELD KISISSLEND EVENDSVSDT QSDSSDTDLL
60 70 80 90 100
ELPESVLHYI NVIKNKSKTA EELILQDVED TDIFSDYKKG CNHGTVTDSH
110 120 130 140 150
MHLRTGSLPE SKANAEQLMK ILSVIEKEEF MRSLAPSARC VSVREIITPD
160 170 180 190 200
TPMDEYILPD EADLSFGYFE VEERCRKSFE AWQDKQQELE EKDKETLEAQ
210 220 230 240 250
NEREKRTFQE EDEKRQCWMR QFEVEKKHLE DLQKQDQDKM NDELHKEEKI
260 270 280 290 300
WKEKYRQHEE HIRNLHLKME EERTRLSELQ EKEKARLFKL RYDAAVKIQA
310 320 330 340 350
TYRASVTYRK YSPIIKEQME KKRRRAQELK EKEAKIRQKE EEKRRRLEEE
360 370 380 390 400
QRVEEEKKKK MLEERRRRER EYEEKKSILR QEREEQRSKE VIRLREHAHS
410 420 430 440 450
PLIITCALKK GDCHGKQQAI AHVPKGKGTI AKESVDSNSK KQEDACLAQQ
460 470 480 490 500
LNKRENTHVQ QLAMKKSTGI KLKPNQAILV ELKMNEKNES LPKLKINENL
510 520 530 540 550
SKNQCSEQPS DQEFNAENVD QKNELENSNL KESVNEQYPW QGLESDTQTE
560 570 580 590 600
EHVEHVREEK VGQETEKLFG FNQEVSAEDS KQAQGVMEET REGLAEEIEI
610 620 630 640 650
KEMTQQGGPS DENNSSPISM QKSLPSLTPD NPEPVERSVT LEEDQETDLK
660 670 680 690 700
SERIEEIPEE GVLSCDAAVI NADASVHTEG EADLQDSASG KLAPSEEAGS
710 720 730 740 750
HSANNLLATE EVEDSPKSEI QEALEKGQQT KAEADGVLTC SVSQLTVLSS
760 770 780 790 800
VEERRLAWVK TFKPWAEIFE QNQHKKIVKK RRLVKCPPNT MPPLDPSAIL
810 820 830 840 850
QYGPWKSLKQ VPVITFQGLP GCSLSTLAEC SNLQILSLRR CGLTSLQGLS
860 870 880 890 900
HCTRLKYIDA QENHIEAISC ENLENLSVVL LNNNLLTSIH GFDGCTNLQS
910 920 930 940 950
LELSHNKITR ISGLESLKYL QELTVDHNQL ISTKGLCEAP TIVYLDCSHN
960 970 980 990 1000
HLTGIDGIGN CGLLQIIKLQ GNYLREPPSL RNHVLLRELH LDDNSISSVE
1010 1020 1030 1040 1050
GLSSCWLPLL QYLSISQNSL ATIVPLFHLV SLEKLDVSNN CLSDLTNVMC
1060 1070 1080 1090 1100
WFNACYSLRE LCLTGNPVLQ EINWRDSILK TLPALRVLNG DMLNSYANDR
1110 1120 1130 1140 1150
IEEHYHQDLR CLLALCQYQL QEFNLLPEKY ITQKRDILTL HAVDRLSQYY
1160 1170 1180 1190 1200
KDLMKLSHEC RRAHEQGDVN TTERSAAETN KNHPDFSNTD SALQNKTLHA
1210 1220 1230 1240 1250
QTNSCEADSP ATSPNPLDTV FRPSTSHCEE LRGRNQEKLM AHKSEQSRIS
1260 1270 1280 1290 1300
SRSNSRASFI EMKMADSPMS NHHNAERSSP TKAAMVIQAQ WRSYIAHRQI
1310 1320 1330 1340 1350
NCSAEMHPTT TEPLQDPLIN NQTTSNEERR KTNMDIQEQR EKAALHIQAV
1360 1370 1380 1390 1400
WKGFILRKKL ATARKAIKDE ESGEEYEEID LEDFEFDEDA LEKDWPALDS
1410 1420 1430 1440 1450
TGFPSQTLPL SNQLPWPKNS RTLRHDETSP TIPVRPAQAW LCNEKENVMS
1460 1470 1480 1490 1500
SEYTQLSSRS ESGILSWTPD SKTSRKNLLQ SEKEEKISEE WGFKDISTAQ
1510 1520 1530 1540 1550
QMLKRAKKMK SKKLRKKLEP SVRLALFKKA KNKVSVTKSS KKTQLRRDNY
1560 1570 1580 1590 1600
FEAHISSQDE EEEAVSKATA AKEKLERSQE YTYQWLHTQV GFPEATSSRN
1610 1620 1630 1640 1650
LKCNHFLPEL DPDVLNGGRV QLVARLVSRE DTDLDLFSMT SASALSVNKD
1660 1670
KKSQTHRYST GSSSKLWFPS ELI
Length:1,673
Mass (Da):191,812
Last modified:February 8, 2011 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iCD250CA5016CC782
GO
Isoform 2 (identifier: Q0P5X1-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     812-814: PVI → FII
     815-1673: Missing.

Show »
Length:814
Mass (Da):94,321
Checksum:iF2FE6DA575ED6F7F
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There are 2 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
D3Z1J9D3Z1J9_MOUSE
Leucine-rich repeat and IQ domain-c...
Lrriq1
520Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
A0A1W2P7G0A0A1W2P7G0_MOUSE
Leucine-rich repeat and IQ domain-c...
Lrriq1
158Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence BAE34547 differs from that shown. Reason: Frameshift.Curated

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section reports difference(s) between the canonical sequence (displayed by default in the entry) and the different sequence submissions merged in the entry. These various submissions may originate from different sequencing projects, different types of experiments, or different biological samples. Sequence conflicts are usually of unknown origin.<p><a href='/help/conflict' target='_top'>More...</a></p>Sequence conflicti295A → T in BAB29931 (PubMed:16141072).Curated1
Sequence conflicti489E → G in BAE34547 (PubMed:16141072).Curated1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_040541812 – 814PVI → FII in isoform 2. 1 Publication3
Alternative sequenceiVSP_040542815 – 1673Missing in isoform 2. 1 PublicationAdd BLAST859

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
AC122850 Genomic DNA No translation available.
AC162918 Genomic DNA No translation available.
BC051400 mRNA Translation: AAH51400.1
AK015687 mRNA Translation: BAB29931.1
AK158531 mRNA Translation: BAE34547.1 Frameshift.

The Consensus CDS (CCDS) project

More...
CCDSi
CCDS48686.1 [Q0P5X1-2]
CCDS48687.1 [Q0P5X1-1]

NCBI Reference Sequences

More...
RefSeqi
NP_001157031.1, NM_001163559.1 [Q0P5X1-1]
NP_083410.1, NM_029134.2 [Q0P5X1-2]
XP_006514322.1, XM_006514259.2 [Q0P5X1-1]
XP_006514325.1, XM_006514262.2

Genome annotation databases

Ensembl eukaryotic genome annotation project

More...
Ensembli
ENSMUST00000020043; ENSMUSP00000020043; ENSMUSG00000019892 [Q0P5X1-2]
ENSMUST00000166240; ENSMUSP00000131419; ENSMUSG00000019892 [Q0P5X1-1]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
74978

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
mmu:74978

UCSC genome browser

More...
UCSCi
uc007gyi.1, mouse [Q0P5X1-2]
uc011xmu.1, mouse [Q0P5X1-1]

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AC122850 Genomic DNA No translation available.
AC162918 Genomic DNA No translation available.
BC051400 mRNA Translation: AAH51400.1
AK015687 mRNA Translation: BAB29931.1
AK158531 mRNA Translation: BAE34547.1 Frameshift.
CCDSiCCDS48686.1 [Q0P5X1-2]
CCDS48687.1 [Q0P5X1-1]
RefSeqiNP_001157031.1, NM_001163559.1 [Q0P5X1-1]
NP_083410.1, NM_029134.2 [Q0P5X1-2]
XP_006514322.1, XM_006514259.2 [Q0P5X1-1]
XP_006514325.1, XM_006514262.2

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Protein-protein interaction databases

BioGRIDi217124, 2 interactors
STRINGi10090.ENSMUSP00000020043

PTM databases

iPTMnetiQ0P5X1
PhosphoSitePlusiQ0P5X1

Proteomic databases

jPOSTiQ0P5X1
PaxDbiQ0P5X1
PeptideAtlasiQ0P5X1
PRIDEiQ0P5X1

Protocols and materials databases

Antibodypedia a portal for validated antibodies

More...
Antibodypediai
52101, 16 antibodies

Genome annotation databases

EnsembliENSMUST00000020043; ENSMUSP00000020043; ENSMUSG00000019892 [Q0P5X1-2]
ENSMUST00000166240; ENSMUSP00000131419; ENSMUSG00000019892 [Q0P5X1-1]
GeneIDi74978
KEGGimmu:74978
UCSCiuc007gyi.1, mouse [Q0P5X1-2]
uc011xmu.1, mouse [Q0P5X1-1]

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
84125
MGIiMGI:1922228, Lrriq1

Phylogenomic databases

eggNOGiKOG0531, Eukaryota
GeneTreeiENSGT00940000162858
HOGENOMiCLU_002837_0_0_1
InParanoidiQ0P5X1
OMAiTHAPACK
OrthoDBi433355at2759
PhylomeDBiQ0P5X1
TreeFamiTF333460

Miscellaneous databases

BioGRID ORCS database of CRISPR phenotype screens

More...
BioGRID-ORCSi
74978, 4 hits in 18 CRISPR screens

ChiTaRS: a database of human, mouse and fruit fly chimeric transcripts and RNA-sequencing data

More...
ChiTaRSi
Lrriq1, mouse

Protein Ontology

More...
PROi
PR:Q0P5X1
RNActiQ0P5X1, protein

The Stanford Online Universal Resource for Clones and ESTs

More...
SOURCEi
Search...

Gene expression databases

BgeeiENSMUSG00000019892, Expressed in spermatid and 39 other tissues

Family and domain databases

Gene3Di3.80.10.10, 2 hits
InterProiView protein in InterPro
IPR000048, IQ_motif_EF-hand-BS
IPR001611, Leu-rich_rpt
IPR003591, Leu-rich_rpt_typical-subtyp
IPR032675, LRR_dom_sf
PfamiView protein in Pfam
PF00612, IQ, 2 hits
PF13855, LRR_8, 2 hits
SMARTiView protein in SMART
SM00015, IQ, 3 hits
SM00369, LRR_TYP, 4 hits
PROSITEiView protein in PROSITE
PS50096, IQ, 3 hits
PS51450, LRR, 10 hits

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiLRIQ1_MOUSE
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q0P5X1
Secondary accession number(s): Q3TYL6, Q9CUK8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 15, 2008
Last sequence update: February 8, 2011
Last modified: August 12, 2020
This is version 89 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. MGD cross-references
    Mouse Genome Database (MGD) cross-references in UniProtKB/Swiss-Prot
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