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Protein
Submitted name:

Os01g0691600 protein

Gene

Os01g0691600

Organism
Oryza sativa subsp. japonica (Rice)
Status
Unreviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-OSA-113418 Formation of the Early Elongation Complex
R-OSA-5696395 Formation of Incision Complex in GG-NER
R-OSA-5696400 Dual Incision in GG-NER
R-OSA-674695 RNA Polymerase II Pre-transcription Events
R-OSA-6781823 Formation of TC-NER Pre-Incision Complex
R-OSA-6782135 Dual incision in TC-NER
R-OSA-6782210 Gap-filling DNA repair synthesis and ligation in TC-NER
R-OSA-6796648 TP53 Regulates Transcription of DNA Repair Genes
R-OSA-72086 mRNA Capping
R-OSA-73776 RNA Polymerase II Promoter Escape
R-OSA-73779 RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
R-OSA-75953 RNA Polymerase II Transcription Initiation
R-OSA-76042 RNA Polymerase II Transcription Initiation And Promoter Clearance
R-OSA-77075 RNA Pol II CTD phosphorylation and interaction with CE

Names & Taxonomyi

Protein namesi
Submitted name:
Os01g0691600 proteinImported
Gene namesi
Name:Os01g0691600Imported
Ordered Locus Names:Os01g0691600Imported
ORF Names:OSNPB_010691600Imported
OrganismiOryza sativa subsp. japonica (Rice)Imported
Taxonomic identifieri39947 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaLiliopsidaPoalesPoaceaeBOP cladeOryzoideaeOryzeaeOryzinaeOryzaOryza sativa
Proteomesi
  • UP000059680 Componenti: Chromosome 1

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

STRINGi39947.LOC_Os01g49680.1

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini293 – 455Helicase ATP-bindingInterPro annotationAdd BLAST163

Phylogenomic databases

eggNOGiKOG1123 Eukaryota
COG1061 LUCA
InParanoidiQ0JK78
OrthoDBiEOG0936038E

Family and domain databases

InterProiView protein in InterPro
IPR032438 ERCC3_RAD25_C
IPR006935 Helicase/UvrB_N
IPR014001 Helicase_ATP-bd
IPR027417 P-loop_NTPase
IPR001161 XPB/Ssl2
IPR032830 XPB/Ssl2_N
PfamiView protein in Pfam
PF16203 ERCC3_RAD25_C, 1 hit
PF13625 Helicase_C_3, 1 hit
PF04851 ResIII, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
TIGRFAMsiTIGR00603 rad25, 1 hit
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q0JK78-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAGGDGDRAR APKRHKSSAP SRSIDETAEL DYTDDVDDDV RDADREVKKR
60 70 80 90 100
DFTKLELKPD HANRPLWACA DGRIFLETFS PLYKQAYDFL IAIAEPVCRP
110 120 130 140 150
ESMHEYNLTP HSLYAAVSVG LETSTIISVM SKLSKTKLPR EIIDFIHAST
160 170 180 190 200
ANYGKVKLVL KKNRYFVESP FPEVLKTLLK DDIICRARIS PEDSVGAPSF
210 220 230 240 250
TISKTAGEMA SGHEDLLDGM ELAAATEDKE THSFEIDPSQ VENVKQRCLP
260 270 280 290 300
NALNFPMLEE YDFRNDTVNP DLEMELKPQA RPRPYQEKSL SKMFGNGRAR
310 320 330 340 350
SGIIVLPCGA GKSLVGVSAA CRIKKSCLCL ATNAVSVDQW AFQFKLWSTI
360 370 380 390 400
KDEHISRFTS DNKEKFRGMA GVVVTTYNMV AFGGKRSEDS EKIIEEIRNR
410 420 430 440 450
EWGLLLMDEV HVVPAHMFRK VISITKSHCK LGLTATLVRE DERITDLNFL
460 470 480 490 500
IGPKLYEANW LDLVKGGFIA NVQCAEVWCP MTKEFFAEYL KKENSKKKQV
510 520 530 540 550
LYAMNPNKFR ACEFLIRFHE QQRGDKIIVF ADNLFALTSY AMKLRKPMIY
560 570 580
GSTSHVERTR ILHQFKNSSD VNTIFLSKVQ
Length:580
Mass (Da):65,740
Last modified:October 3, 2006 - v1
Checksum:i829DBCC005F96EAD
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A0P0V6X5A0A0P0V6X5_ORYSJ
Os01g0691600 protein
Os01g0691600 OSNPB_010691600
522Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008207 Genomic DNA Translation: BAF05850.1
AP014957 Genomic DNA Translation: BAS73809.1
UniGeneiOs.32672

Genome annotation databases

EnsemblPlantsiOs01t0691600-01; Os01t0691600-01; Os01g0691600
GrameneiOs01t0691600-01; Os01t0691600-01; Os01g0691600

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AP008207 Genomic DNA Translation: BAF05850.1
AP014957 Genomic DNA Translation: BAS73809.1
UniGeneiOs.32672

3D structure databases

ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

STRINGi39947.LOC_Os01g49680.1

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblPlantsiOs01t0691600-01; Os01t0691600-01; Os01g0691600
GrameneiOs01t0691600-01; Os01t0691600-01; Os01g0691600

Phylogenomic databases

eggNOGiKOG1123 Eukaryota
COG1061 LUCA
InParanoidiQ0JK78
OrthoDBiEOG0936038E

Enzyme and pathway databases

ReactomeiR-OSA-113418 Formation of the Early Elongation Complex
R-OSA-5696395 Formation of Incision Complex in GG-NER
R-OSA-5696400 Dual Incision in GG-NER
R-OSA-674695 RNA Polymerase II Pre-transcription Events
R-OSA-6781823 Formation of TC-NER Pre-Incision Complex
R-OSA-6782135 Dual incision in TC-NER
R-OSA-6782210 Gap-filling DNA repair synthesis and ligation in TC-NER
R-OSA-6796648 TP53 Regulates Transcription of DNA Repair Genes
R-OSA-72086 mRNA Capping
R-OSA-73776 RNA Polymerase II Promoter Escape
R-OSA-73779 RNA Polymerase II Transcription Pre-Initiation And Promoter Opening
R-OSA-75953 RNA Polymerase II Transcription Initiation
R-OSA-76042 RNA Polymerase II Transcription Initiation And Promoter Clearance
R-OSA-77075 RNA Pol II CTD phosphorylation and interaction with CE

Family and domain databases

InterProiView protein in InterPro
IPR032438 ERCC3_RAD25_C
IPR006935 Helicase/UvrB_N
IPR014001 Helicase_ATP-bd
IPR027417 P-loop_NTPase
IPR001161 XPB/Ssl2
IPR032830 XPB/Ssl2_N
PfamiView protein in Pfam
PF16203 ERCC3_RAD25_C, 1 hit
PF13625 Helicase_C_3, 1 hit
PF04851 ResIII, 1 hit
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SUPFAMiSSF52540 SSF52540, 2 hits
TIGRFAMsiTIGR00603 rad25, 1 hit
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiQ0JK78_ORYSJ
AccessioniPrimary (citable) accession number: Q0JK78
Entry historyiIntegrated into UniProtKB/TrEMBL: October 3, 2006
Last sequence update: October 3, 2006
Last modified: November 7, 2018
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiUnreviewed (UniProtKB/TrEMBL)

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteomeImported
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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