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UniProtKB - Q0DXS3 (RDR1_ORYSJ)
Protein
Probable RNA-dependent RNA polymerase 1
Gene
RDR1
Organism
Oryza sativa subsp. japonica (Rice)
Status
Functioni
Probably involved in the RNA silencing pathway and required for the generation of small interfering RNAs (siRNAs).
By similarityCatalytic activityi
- EC:2.7.7.48
GO - Molecular functioni
- RNA binding Source: UniProtKB-KW
- RNA-directed 5'-3' RNA polymerase activity Source: GO_Central
GO - Biological processi
- positive regulation of posttranscriptional gene silencing Source: EnsemblPlants
- production of siRNA involved in gene silencing by small RNA Source: GO_Central
- production of siRNA involved in RNA interference Source: GO_Central
- response to salicylic acid Source: EnsemblPlants
- response to virus Source: EnsemblPlants
- wax biosynthetic process Source: EnsemblPlants
Keywordsi
Molecular function | Nucleotidyltransferase, RNA-binding, RNA-directed RNA polymerase, Transferase |
Biological process | RNA-mediated gene silencing |
Names & Taxonomyi
Protein namesi | |
Gene namesi | Name:RDR1 Ordered Locus Names:Os02g0736200, LOC_Os02g50330 |
Organismi | Oryza sativa subsp. japonica (Rice) |
Taxonomic identifieri | 39947 [NCBI] |
Taxonomic lineagei | Eukaryota › Viridiplantae › Streptophyta › Embryophyta › Tracheophyta › Spermatophyta › Magnoliopsida › Liliopsida › Poales › Poaceae › BOP clade › Oryzoideae › Oryzeae › Oryzinae › Oryza › Oryza sativa |
Proteomesi |
|
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000378445 | 1 – 740 | Probable RNA-dependent RNA polymerase 1Add BLAST | 740 |
Proteomic databases
PaxDbi | Q0DXS3 |
Family & Domainsi
Sequence similaritiesi
Belongs to the RdRP family.Curated
Phylogenomic databases
InParanoidi | Q0DXS3 |
Family and domain databases
InterProi | View protein in InterPro IPR007855, RNA-dep_RNA_pol_euk-typ |
PANTHERi | PTHR23079, PTHR23079, 1 hit |
Pfami | View protein in Pfam PF05183, RdRP, 1 hit |
i Sequence
Sequence statusi: Complete.
Q0DXS3-1 [UniParc]FASTAAdd to basket
10 20 30 40 50
MMDWFMSTVY FYGPEINVSN RVVRNFSSDI ENFLRISFVD EDCEKLRATD
60 70 80 90 100
LSPRSASGHD ANRTALYKRV LSVLSDGITI GGKNFEFLAF SSSQLRDNSA
110 120 130 140 150
WMFASRQGLA ASDIRTWMGD FRNIRNVAKY AARLGQSFSS STETLKVQKY
160 170 180 190 200
EVEEISDIKN GTQHVFSDGI GKISSAFANE VAMKCNLKRF APSAFQIRYG
210 220 230 240 250
GYKGVVAVDP TSRWKLSLRK SMLKFQSDNI TVDVLAYSKY QPGFLNRQLI
260 270 280 290 300
TLLSTLGVRD SVFEQKQEEA VNQLNKMVTD PQAAIEAIEL MPMGEITNAV
310 320 330 340 350
KELLLCGYQP DDEPYLSMLL QTFRASKLLE LKTKSRILIP KGRAMMGCLD
360 370 380 390 400
ETRTLKYGQV FIRATSGVND NDRFTVTGKV VIAKNPCLHP GDIRILHAVD
410 420 430 440 450
VPVLHHMFNC VVFPQQGPRP HPNECSGSDL DGDIYFVSWD PSLIPPRMVT
460 470 480 490 500
PMDYTPAPTE TLDHDVTIEE VEEYFTNYIV NESLGMIANA HVVFADKEDL
510 520 530 540 550
KAESSPCIEL AKLFSIAVDF PKTGVPALIP PELHVKEYPD FMEKLDKVTY
560 570 580 590 600
ESKGVIGKLY REIKKHTPHI KHFTREVARR SYDTDMIVDG YEDYITEAMA
610 620 630 640 650
LKDEYDFKLG NLMDHYGIKS EAEIISGCIL KMAKNFTKKS DADAIRLAVR
660 670 680 690 700
SLRKEARSRF SEMSLDDNGH GHDASEAKAS AWYHVTYHPE FWGCYNEGYE
710 720 730 740
RPHFISFPWC IYEKLLRIKQ RRKFVRKMQP ELFSLHNLRI
Sequence cautioni
The sequence BAF09965 differs from that shown. Reason: Erroneous gene model prediction.Curated
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AP008208 Genomic DNA Translation: BAF09965.1 Sequence problems. AP014958 Genomic DNA Translation: BAS80805.1 AK101440 mRNA No translation available. |
Genome annotation databases
EnsemblPlantsi | Os02t0736200-01; Os02t0736200-01; Os02g0736200 |
Gramenei | Os02t0736200-01; Os02t0736200-01; Os02g0736200 |
Similar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | AP008208 Genomic DNA Translation: BAF09965.1 Sequence problems. AP014958 Genomic DNA Translation: BAS80805.1 AK101440 mRNA No translation available. |
3D structure databases
AlphaFoldDBi | Q0DXS3 |
SMRi | Q0DXS3 |
ModBasei | Search... |
Protein-protein interaction databases
STRINGi | 39947.Q0DXS3 |
Proteomic databases
PaxDbi | Q0DXS3 |
Genome annotation databases
EnsemblPlantsi | Os02t0736200-01; Os02t0736200-01; Os02g0736200 |
Gramenei | Os02t0736200-01; Os02t0736200-01; Os02g0736200 |
Phylogenomic databases
InParanoidi | Q0DXS3 |
Family and domain databases
InterProi | View protein in InterPro IPR007855, RNA-dep_RNA_pol_euk-typ |
PANTHERi | PTHR23079, PTHR23079, 1 hit |
Pfami | View protein in Pfam PF05183, RdRP, 1 hit |
MobiDBi | Search... |
Entry informationi
Entry namei | RDR1_ORYSJ | |
Accessioni | Q0DXS3Primary (citable) accession number: Q0DXS3 Secondary accession number(s): A0A0P0VPF0 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | July 7, 2009 |
Last sequence update: | July 7, 2009 | |
Last modified: | May 25, 2022 | |
This is version 73 of the entry and version 2 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Plant Protein Annotation Program |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Oryza sativa (rice)
Index of Oryza sativa entries and their corresponding gene designations - SIMILARITY comments
Index of protein domains and families