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Entry version 137 (29 Sep 2021)
Sequence version 3 (22 Sep 2009)
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Protein

Intracellular protein transport protein uso1

Gene

uso1

Organism
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
Status
Reviewed-Annotation score:

Annotation score:4 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Required for protein transport from the ER to the Golgi complex.

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Biological processProtein transport, Transport

Enzyme and pathway databases

Reactome - a knowledgebase of biological pathways and processes

More...
Reactomei
R-SPO-204005, COPII-mediated vesicle transport
R-SPO-6807878, COPI-mediated anterograde transport

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Intracellular protein transport protein uso1
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:uso1
ORF Names:SPAC29E6.03c, SPAC30.07c
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiSchizosaccharomyces pombe (strain 972 / ATCC 24843) (Fission yeast)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri284812 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaFungiDikaryaAscomycotaTaphrinomycotinaSchizosaccharomycetesSchizosaccharomycetalesSchizosaccharomycetaceaeSchizosaccharomyces
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000002485 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome I

Organism-specific databases

Schizosaccharomyces pombe database

More...
PomBasei
SPAC29E6.03c, uso1

Eukaryotic Pathogen, Vector and Host Database Resources

More...
VEuPathDBi
FungiDB:SPAC29E6.03c

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Keywords - Cellular componenti

Cytoplasm, Cytoplasmic vesicle, Cytoskeleton, Endoplasmic reticulum, Golgi apparatus, Membrane

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001164211 – 1067Intracellular protein transport protein uso1Add BLAST1067

Proteomic databases

MaxQB - The MaxQuant DataBase

More...
MaxQBi
Q09857

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q09857

PRoteomics IDEntifications database

More...
PRIDEi
Q09857

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q09857

SwissPalm database of S-palmitoylation events

More...
SwissPalmi
Q09857

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
4896.SPAC29E6.03c.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q09857

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati51 – 92ARM 1Add BLAST42
Repeati105 – 144ARM 2Add BLAST40
Repeati148 – 188ARM 3Add BLAST41
Repeati191 – 234ARM 4Add BLAST44
Repeati237 – 285ARM 5Add BLAST49
Repeati287 – 313ARM 6Add BLAST27
Repeati343 – 366ARM 7Add BLAST24
Repeati367 – 405ARM 8Add BLAST39
Repeati407 – 446ARM 9Add BLAST40
Repeati484 – 513ARM 10Add BLAST30
Repeati514 – 555ARM 11Add BLAST42
Repeati648 – 688ARM 12Add BLAST41
Repeati770 – 810ARM 13Add BLAST41
Repeati830 – 873ARM 14Add BLAST44
Repeati958 – 997ARM 15Add BLAST40

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni934 – 962DisorderedSequence analysisAdd BLAST29

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili623 – 1034Sequence analysisAdd BLAST412

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular type of amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi935 – 962Basic and acidic residuesSequence analysisAdd BLAST28

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the VDP/USO1/EDE1 family.Curated

Keywords - Domaini

Coiled coil, Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG0946, Eukaryota

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_006318_4_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q09857

Identification of Orthologs from Complete Genome Data

More...
OMAi
RGWISQQ

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q09857

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.25.10.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR011989, ARM-like
IPR016024, ARM-type_fold
IPR006953, Vesicle_Uso1_P115_head

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF04869, Uso1_p115_head, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF48371, SSF48371, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q09857-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDIFHKSYNV ILSPPKVQQA DETISKLCDR LEHATLFEDR KAAALGIKSF
60 70 80 90 100
AREFKELVAA HGLKGIIQSL HRDYDDPELL KVTLETCLIL TRHDDDSRAS
110 120 130 140 150
DTGLWIADQF ILNQDNIQCL LQSISHKDFY VRLYSVELFS AILSCRPTEL
160 170 180 190 200
KDCLQTFPSA ISSIMVPLRD SIEPVRNADL YFLSELVKDC TSIQKLVVFE
210 220 230 240 250
NAFETLFSLL ENEGGVDGGI IALEALKFLN VLLKDNISNQ NYFRESNHIP
260 270 280 290 300
SLLKLLSVDT FVDGTWDTSR VQCVIEALYA LQSLVPIGLS SSIANQNAVV
310 320 330 340 350
SNHGIDVLLT LATHPDLLFF DVQKISWITL AHVVYSNARA QNSFVDSTFF
360 370 380 390 400
DIKNTDVLTC LFDYLFLSSI SPSHRYSVAF FLRSLTSEND ELSSKFLKQI
410 420 430 440 450
IHAYTHKQDN RLNIIQGYLD LVHLSDQDQY DNWFTSTILT YLVIDNDQRK
460 470 480 490 500
YLLCSIPLFQ DMDNDEDSES EDKVTFIQCV STKLIATLRH ENALQNCVGY
510 520 530 540 550
LTLLIALVYG NPDSVKDFLS ESSILQTFLT ALMDESSSAN SVIQGMIAVF
560 570 580 590 600
LSLVYYYCPI ESPVSKSDVY NAITSAVKRD VFINRLQRLR RMNLYEITFL
610 620 630 640 650
SMKQKMHAID DAADAFNTKI GEINTLDAFD EAQKQLKSLR EEIDNTKEAL
660 670 680 690 700
DLSVKERSIQ EEKLNESLKT SKTNLEEQTQ LAEKYHEELL DNQQKLYDLR
710 720 730 740 750
IELDYTKSNC KQMEEEMQVL REGHESEIKD FIEEHSKLTK QLDDIKNQFG
760 770 780 790 800
IISSKNRDLL SELEKSKSLN NSLAALESKN KKLENDLNLL TEKLNKKNAD
810 820 830 840 850
TESFKNTIRE AELSKKALND NLGNKENIIS DLKNKLSEES TRLQELQSQL
860 870 880 890 900
NQDKNQIETL NERISAAADE LSSMESINKN QANELKLAKQ KCSNLQEKIN
910 920 930 940 950
FGNKLAKEHT EKISSLEKDL EAATKTASTL SKELKTVKSE NDSLKSVSND
960 970 980 990 1000
DQNKEKSVNN EKFKEVSQAL AEANEKLNAR DEEIERLKVD IIGLQNASLN
1010 1020 1030 1040 1050
MQSLKDSDNR TISDLESKNK ELEKKLKEAD EYWLLIVEEL ESKRTKDKEL
1060
LRQCGQAVSE DEQSEEE
Length:1,067
Mass (Da):121,576
Last modified:September 22, 2009 - v3
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iDF5483D038FBCA29
GO

<p>This subsection of the 'Sequence' section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence CAA91425 differs from that shown. Reason: Erroneous gene model prediction.Curated

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
Z66525 Genomic DNA Translation: CAA91425.1 Sequence problems.
CU329670 Genomic DNA Translation: CAB66466.2

Protein sequence database of the Protein Information Resource

More...
PIRi
S62509
T50213

NCBI Reference Sequences

More...
RefSeqi
NP_594561.2, NM_001019990.2

Genome annotation databases

Ensembl fungal genome annotation project

More...
EnsemblFungii
SPAC29E6.03c.1; SPAC29E6.03c.1:pep; SPAC29E6.03c

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
2542708

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
spo:SPAC29E6.03c

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z66525 Genomic DNA Translation: CAA91425.1 Sequence problems.
CU329670 Genomic DNA Translation: CAB66466.2
PIRiS62509
T50213
RefSeqiNP_594561.2, NM_001019990.2

3D structure databases

SMRiQ09857
ModBaseiSearch...

Protein-protein interaction databases

STRINGi4896.SPAC29E6.03c.1

PTM databases

iPTMnetiQ09857
SwissPalmiQ09857

Proteomic databases

MaxQBiQ09857
PaxDbiQ09857
PRIDEiQ09857

Genome annotation databases

EnsemblFungiiSPAC29E6.03c.1; SPAC29E6.03c.1:pep; SPAC29E6.03c
GeneIDi2542708
KEGGispo:SPAC29E6.03c

Organism-specific databases

PomBaseiSPAC29E6.03c, uso1
VEuPathDBiFungiDB:SPAC29E6.03c

Phylogenomic databases

eggNOGiKOG0946, Eukaryota
HOGENOMiCLU_006318_4_0_1
InParanoidiQ09857
OMAiRGWISQQ
PhylomeDBiQ09857

Enzyme and pathway databases

ReactomeiR-SPO-204005, COPII-mediated vesicle transport
R-SPO-6807878, COPI-mediated anterograde transport

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q09857

Family and domain databases

Gene3Di1.25.10.10, 1 hit
InterProiView protein in InterPro
IPR011989, ARM-like
IPR016024, ARM-type_fold
IPR006953, Vesicle_Uso1_P115_head
PfamiView protein in Pfam
PF04869, Uso1_p115_head, 1 hit
SUPFAMiSSF48371, SSF48371, 1 hit

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiUSO1_SCHPO
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q09857
Secondary accession number(s): Q9P7V0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 1, 1996
Last sequence update: September 22, 2009
Last modified: September 29, 2021
This is version 137 of the entry and version 3 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programFungal Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Schizosaccharomyces pombe
    Schizosaccharomyces pombe: entries and gene names
  2. SIMILARITY comments
    Index of protein domains and families
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