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Protein

60S ribosomal protein L10

Gene

rpl-10

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein inferred from homologyi

Functioni

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-CEL-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-CEL-1799339 SRP-dependent cotranslational protein targeting to membrane
R-CEL-72689 Formation of a pool of free 40S subunits
R-CEL-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-CEL-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-CEL-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
60S ribosomal protein L10
Alternative name(s):
QM protein homolog
Gene namesi
Name:rpl-10
ORF Names:F10B5.1
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiF10B5.1 ; CE01543 ; WBGene00004421 ; rpl-10

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001471121 – 21460S ribosomal protein L10Add BLAST214

Proteomic databases

EPDiQ09533
PaxDbiQ09533
PeptideAtlasiQ09533
PRIDEiQ09533

PTM databases

iPTMnetiQ09533

Expressioni

Gene expression databases

BgeeiWBGene00004421

Interactioni

Subunit structurei

Component of the large ribosomal subunit. Mature ribosomes consist of a small (40S) and a large (60S) subunit. The 40S subunit contains about 33 different proteins and 1 molecule of RNA (18S). The 60S subunit contains about 49 different proteins and 3 molecules of RNA (28S, 5.8S and 5S) (By similarity).By similarity

Protein-protein interaction databases

BioGridi39640, 2 interactors
DIPiDIP-24839N
IntActiQ09533, 2 interactors
STRINGi6239.F10B5.1.2

Structurei

3D structure databases

ProteinModelPortaliQ09533
SMRiQ09533
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0857 Eukaryota
COG0197 LUCA
GeneTreeiENSGT00390000003897
HOGENOMiHOG000223754
InParanoidiQ09533
KOiK02866
OMAiPYTRKEY
OrthoDBiEOG091G0H9M
PhylomeDBiQ09533

Family and domain databases

CDDicd01433 Ribosomal_L16_L10e, 1 hit
Gene3Di3.90.1170.10, 1 hit
InterProiView protein in InterPro
IPR001197 Ribosomal_L10e
IPR016180 Ribosomal_L10e/L16
IPR036920 Ribosomal_L10e/L16_sf
IPR018255 Ribosomal_L10e_CS
PANTHERiPTHR11726 PTHR11726, 1 hit
PfamiView protein in Pfam
PF00252 Ribosomal_L16, 1 hit
PIRSFiPIRSF005590 Ribosomal_L10, 1 hit
SUPFAMiSSF54686 SSF54686, 1 hit
TIGRFAMsiTIGR00279 uL16_euk_arch, 1 hit
PROSITEiView protein in PROSITE
PS01257 RIBOSOMAL_L10E, 1 hit

Sequencei

Sequence statusi: Complete.

Q09533-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRRPARCYR YIKNKPYPKS RFCRGVPDAK IRIFDLGNKR ANVDTFPACV
60 70 80 90 100
HMMSNEREHL SSEALEAARI CANKYMVKNC GKDGFHLRVR KHPFHVTRIN
110 120 130 140 150
KMLSCAGADR LQTGMRGAYG KPQGLVARVD IGDILFSMRI KEGNVKHAIE
160 170 180 190 200
AFRRAKFKFP GRQIIVSSRK WGFTKWDRED YERMRAEGRL RSDGVGVQLQ
210
REHGPLTKWI ENPI
Length:214
Mass (Da):24,749
Last modified:November 1, 1995 - v1
Checksum:iBC12D2B64BD31AAC
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z48334 Genomic DNA Translation: CAA88308.1
PIRiT20688
RefSeqiNP_495707.1, NM_063306.5
UniGeneiCel.23306

Genome annotation databases

EnsemblMetazoaiF10B5.1.1; F10B5.1.1; WBGene00004421
F10B5.1.2; F10B5.1.2; WBGene00004421
GeneIDi174311
KEGGicel:CELE_F10B5.1
UCSCiF10B5.1.1 c. elegans

Similar proteinsi

Entry informationi

Entry nameiRL10_CAEEL
AccessioniPrimary (citable) accession number: Q09533
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: July 18, 2018
This is version 123 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
  2. Ribosomal proteins
    Ribosomal proteins families and list of entries
  3. SIMILARITY comments
    Index of protein domains and families

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