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Protein

SWI/SNF nucleosome remodeling complex component

Gene

C08B11.3

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
DNA bindingi623 – 697RFX-type winged-helixPROSITE-ProRule annotationAdd BLAST75

GO - Molecular functioni

GO - Biological processi

Names & Taxonomyi

Protein namesi
Recommended name:
SWI/SNF nucleosome remodeling complex component
Alternative name(s):
ARID domain-containing protein C08B11.3
Gene namesi
ORF Names:C08B11.3
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome II

Organism-specific databases

WormBaseiC08B11.3 ; CE01473 ; WBGene00007433 ; swsn-7

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002006001 – 1244SWI/SNF nucleosome remodeling complex componentAdd BLAST1244

Proteomic databases

EPDiQ09441
PaxDbiQ09441
PeptideAtlasiQ09441
PRIDEiQ09441

PTM databases

iPTMnetiQ09441

Expressioni

Gene expression databases

BgeeiWBGene00007433 Expressed in 5 organ(s), highest expression level in multi-cellular organism

Interactioni

Protein-protein interaction databases

ComplexPortaliCPX-1031 PBAF chromatin remodeling complex
STRINGi6239.C08B11.3.1

Structurei

3D structure databases

ProteinModelPortaliQ09441
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini24 – 116ARIDPROSITE-ProRule annotationAdd BLAST93

Phylogenomic databases

eggNOGiKOG2312 Eukaryota
ENOG410XT3H LUCA
GeneTreeiENSGT00390000016138
HOGENOMiHOG000020024
InParanoidiQ09441
OMAiSCLILRN
OrthoDBiEOG091G169Y

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR016024 ARM-type_fold
IPR003150 DNA-bd_RFX
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF01388 ARID, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
SSF48371 SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit
PS51526 RFX_DBD, 1 hit

Sequence (1+)i

Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q09441-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MESRKRKSEL EHYIDKLTDP PEKQRKMAEF YNSLRMFYKR RWNATLKLPH
60 70 80 90 100
VQGVEVNLYR LYDTVMALGG WQKVAASDKW SDIAEMFGCK DDILCGDHAI
110 120 130 140 150
KIIYMRYLSK FEQVETIGDV DDYVDNEMSR SRGRNATSFF ATNECPISNN
160 170 180 190 200
RMVQEYQHRD ERGQIINEPD YARLTKSLIS GLPNEIDFAM NVCMLLSHAG
210 220 230 240 250
PKQLRICHAP TLLTLLVAHT GVYDEDDETM ADMGKEWKRT TKHNFRDFWA
260 270 280 290 300
SSGVPLDMLM TFLDREIEAE YIDEDDQFFT GVSETFNVKD SRCWRLNQVT
310 320 330 340 350
TIIRNLSFEP ANRVTIVKTW PVMKFLIMCA SCKWSPLYVA ALDALSNLAT
360 370 380 390 400
DIDLTDKTLV YISQHAILRI ITDGIFSLDK FKLVRSLEIL TGLCGFEGNE
410 420 430 440 450
AIICDWLNSA TIAHIFEVVG VKDIMMCVYT LECLYQISEM GDTACDLISE
460 470 480 490 500
SPKAIQQLVS MATLEAVSFG PAGLAGMKVV EYQPSFTQGS NQQQNPHHSQ
510 520 530 540 550
GGHQLGHSNV RMGGLNHNQH HQQIGPPGAP GAAPMTVRQV IQNNLALQQV
560 570 580 590 600
QRENLNREQY STQSSQPHPP HTNVPPSPSI LAHHSSGLVQ QNGMKFDRRT
610 620 630 640 650
GNLPVRPIAP STNSGESQLE QLTEKWIRQN CVFEPAMSTP RGELYAAYVD
660 670 680 690 700
DLRNLYHSMS GSLAMFSGVM KNLYPDVNFR MAQNGIMIVA QGIRLIRPHR
710 720 730 740 750
LAPAASQSAS ESHPLMKKML TSEPKEENGV LINGHAVQES GAERIIKTEP
760 770 780 790 800
IRTDEPSVLI ESQEQSVPKK QNDINGEETD EVELNSKIVT PEKKSITNGT
810 820 830 840 850
VEVCQEPIQA SKLFDENYAN QIEGSEVSIE IREQFVNDTD NVKLESEKIN
860 870 880 890 900
GIICNGNSKV KKESMASRAA HIVAVAAACN GDLERMNVVS NGNDIEKEIE
910 920 930 940 950
KETEKVEEET NEEKNKEVVE TEVVDDAQES EKRKCVPPSS NPTDYMCDWD
960 970 980 990 1000
CCSIYYASPS HVLKHLSEEH VAEELRLLCR WNGCADPTPR NRWSLITHIQ
1010 1020 1030 1040 1050
DSHCNEAQLK AASQKRKEGG GIAPVRGAPR AEVISRDINN HPGYAKNAAF
1060 1070 1080 1090 1100
DAIRRHAFNF LSRELTDEAE GPVTKSIRLT SCLILRNLAR YSAEGRQKLR
1110 1120 1130 1140 1150
RHESHICWLA LSRLESAHAL SQLLSELHQA PAAEEEQQKM LSEVPSSASL
1160 1170 1180 1190 1200
SSMAGSSSQL PTVPDSPTSS VASAPMKEST SVSNKPTVHI NRMLNFSSLN
1210 1220 1230 1240
EKTPTSPQFT AGSSPHRHQP IQQHIPSQPS PLVQTTPVRA GAGI
Length:1,244
Mass (Da):139,117
Last modified:November 1, 1995 - v1
Checksum:i50FB3E4C13F73E06
GO

Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A2K5ATP7A0A2K5ATP7_CAEEL
SWI/SNF nucleosome remodeling compl...
swsn-7 C08B11.3, CELE_C08B11.3
1,201Annotation score:

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z46676 Genomic DNA Translation: CAA86663.1
PIRiT19068
RefSeqiNP_495679.1, NM_063278.4
UniGeneiCel.5858

Genome annotation databases

EnsemblMetazoaiC08B11.3; C08B11.3; WBGene00007433
GeneIDi174286
UCSCiC08B11.3 c. elegans

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z46676 Genomic DNA Translation: CAA86663.1
PIRiT19068
RefSeqiNP_495679.1, NM_063278.4
UniGeneiCel.5858

3D structure databases

ProteinModelPortaliQ09441
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

ComplexPortaliCPX-1031 PBAF chromatin remodeling complex
STRINGi6239.C08B11.3.1

PTM databases

iPTMnetiQ09441

Proteomic databases

EPDiQ09441
PaxDbiQ09441
PeptideAtlasiQ09441
PRIDEiQ09441

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsemblMetazoaiC08B11.3; C08B11.3; WBGene00007433
GeneIDi174286
UCSCiC08B11.3 c. elegans

Organism-specific databases

CTDi174286
WormBaseiC08B11.3 ; CE01473 ; WBGene00007433 ; swsn-7

Phylogenomic databases

eggNOGiKOG2312 Eukaryota
ENOG410XT3H LUCA
GeneTreeiENSGT00390000016138
HOGENOMiHOG000020024
InParanoidiQ09441
OMAiSCLILRN
OrthoDBiEOG091G169Y

Miscellaneous databases

PROiPR:Q09441

Gene expression databases

BgeeiWBGene00007433 Expressed in 5 organ(s), highest expression level in multi-cellular organism

Family and domain databases

Gene3Di1.10.150.60, 1 hit
InterProiView protein in InterPro
IPR001606 ARID_dom
IPR036431 ARID_dom_sf
IPR016024 ARM-type_fold
IPR003150 DNA-bd_RFX
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF01388 ARID, 1 hit
SMARTiView protein in SMART
SM00501 BRIGHT, 1 hit
SUPFAMiSSF46774 SSF46774, 1 hit
SSF48371 SSF48371, 1 hit
PROSITEiView protein in PROSITE
PS51011 ARID, 1 hit
PS51526 RFX_DBD, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiSWSN7_CAEEL
AccessioniPrimary (citable) accession number: Q09441
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: November 1, 1995
Last modified: September 12, 2018
This is version 115 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
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Main funding by: National Institutes of Health

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