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Entry version 89 (18 Sep 2019)
Sequence version 1 (01 Nov 1997)
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Protein

Uncharacterized protein T09B9.4

Gene

T09B9.4

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Uncharacterized protein T09B9.4
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:T09B9.4
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCaenorhabditis elegans
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri6239 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001940 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome X

Organism-specific databases

WormBase

More...
WormBasei
T09B9.4 ; CE01652 ; WBGene00011645

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000654581 – 528Uncharacterized protein T09B9.4Add BLAST528

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q09350

PaxDb, a database of protein abundance averages across all three domains of life

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PaxDbi
Q09350

PeptideAtlas

More...
PeptideAtlasi
Q09350

PRoteomics IDEntifications database

More...
PRIDEi
Q09350

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q09350

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

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Bgeei
WBGene00011645 Expressed in 5 organ(s), highest expression level in multi-cellular organism

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

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BioGridi
46105, 2 interactors

Database of interacting proteins

More...
DIPi
DIP-24984N

Protein interaction database and analysis system

More...
IntActi
Q09350, 2 interactors

STRING: functional protein association networks

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STRINGi
6239.T09B9.4

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

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SMRi
Q09350

Database of comparative protein structure models

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ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section indicates the positions and types of repeated sequence motifs or repeated domains within the protein.<p><a href='/help/repeat' target='_top'>More...</a></p>Repeati185 – 2131Add BLAST29
Repeati285 – 3132Add BLAST29

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a region of interest that cannot be described in other subsections.<p><a href='/help/region' target='_top'>More...</a></p>Regioni185 – 3132 X 29 AA repeatsAdd BLAST129

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Repeat

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG2129 Eukaryota
ENOG410XR5H LUCA

Ensembl GeneTree

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GeneTreei
ENSGT00390000013594

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

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HOGENOMi
HOG000016529

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q09350

KEGG Orthology (KO)

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KOi
K09288

Identification of Orthologs from Complete Genome Data

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OMAi
MSQMNEE

Database of Orthologous Groups

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OrthoDBi
713195at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q09350

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR019152 DUF2046

The PANTHER Classification System

More...
PANTHERi
PTHR15276 PTHR15276, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF09755 DUF2046, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q09350-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEHPKRPTPK NEALHIDASG RGESSFSVHR SHSGGHEPFA PSPGSSIGAS
60 70 80 90 100
VSMFSSRNSE AEVGDAEDLD GVRTIMMNIG VPDLLADREI QMRYPEFYQF
110 120 130 140 150
LLAEQPTWFE PAPSNGTVYR VHHTTPLPDN HKKLRKELPF EMLDLMYRFF
160 170 180 190 200
RQKHVNSQRK RENKELLEAN KQLRIAAVQM FTKAEQEEEY ISNSLLKKIQ
210 220 230 240 250
QLNQDKDYLV KKYQKDEESL TKSLMANVAK IPDVHGDEAA AEKLMADKQA
260 270 280 290 300
EIERLRTYCS RAEKSYQEEL MRLRAEKVDH ESALEQEQEL LINTLGKRMS
310 320 330 340 350
QMNEEKRKLQ QALEMAYLNG FVDFDDTVEV ALHASASQKY NGNSPNVSAN
360 370 380 390 400
SPVVNTNSPA VSTSSPLVRN TDQQSTSSYR QQLNETAHLH IENKKLVGMC
410 420 430 440 450
NQERRRSQAT EAEVKKLNQR MSKMEAVLEA IRIEAVRTDG PLAWRLAALS
460 470 480 490 500
HDNSIDEPPH RMLAERRAHG SSPPTVVVQP STSRAGSNST ANINNDTHPH
510 520
AQVAPILATV HPTQRATPAR NERPDSHY
Length:528
Mass (Da):59,684
Last modified:November 1, 1997 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:iEB4E8D856BCAC6CC
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

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EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
Z47070 Genomic DNA Translation: CAA87341.1

Protein sequence database of the Protein Information Resource

More...
PIRi
T24730

NCBI Reference Sequences

More...
RefSeqi
NP_509640.1, NM_077239.3

Genome annotation databases

Ensembl metazoan genome annotation project

More...
EnsemblMetazoai
T09B9.4.1; T09B9.4.1; WBGene00011645

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
181190

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
cel:CELE_T09B9.4

UCSC genome browser

More...
UCSCi
T09B9.4.1 c. elegans

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z47070 Genomic DNA Translation: CAA87341.1
PIRiT24730
RefSeqiNP_509640.1, NM_077239.3

3D structure databases

SMRiQ09350
ModBaseiSearch...

Protein-protein interaction databases

BioGridi46105, 2 interactors
DIPiDIP-24984N
IntActiQ09350, 2 interactors
STRINGi6239.T09B9.4

PTM databases

iPTMnetiQ09350

Proteomic databases

EPDiQ09350
PaxDbiQ09350
PeptideAtlasiQ09350
PRIDEiQ09350

Genome annotation databases

EnsemblMetazoaiT09B9.4.1; T09B9.4.1; WBGene00011645
GeneIDi181190
KEGGicel:CELE_T09B9.4
UCSCiT09B9.4.1 c. elegans

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
181190
WormBaseiT09B9.4 ; CE01652 ; WBGene00011645

Phylogenomic databases

eggNOGiKOG2129 Eukaryota
ENOG410XR5H LUCA
GeneTreeiENSGT00390000013594
HOGENOMiHOG000016529
InParanoidiQ09350
KOiK09288
OMAiMSQMNEE
OrthoDBi713195at2759
PhylomeDBiQ09350

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q09350

Gene expression databases

BgeeiWBGene00011645 Expressed in 5 organ(s), highest expression level in multi-cellular organism

Family and domain databases

InterProiView protein in InterPro
IPR019152 DUF2046
PANTHERiPTHR15276 PTHR15276, 1 hit
PfamiView protein in Pfam
PF09755 DUF2046, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiYRU4_CAEEL
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q09350
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: September 18, 2019
This is version 89 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
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