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Protein

Polyadenylation and cleavage factor homolog 11

Gene

pcf-11

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

GO - Molecular functioni

GO - Biological processi

Enzyme and pathway databases

ReactomeiR-CEL-109688 Cleavage of Growing Transcript in the Termination Region
R-CEL-72163 mRNA Splicing - Major Pathway
R-CEL-72187 mRNA 3'-end processing
R-CEL-77595 Processing of Intronless Pre-mRNAs

Names & Taxonomyi

Protein namesi
Recommended name:
Polyadenylation and cleavage factor homolog 11
Gene namesi
Name:pcf-11
ORF Names:R144.2
OrganismiCaenorhabditis elegans
Taxonomic identifieri6239 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
Proteomesi
  • UP000001940 Componenti: Chromosome III

Organism-specific databases

WormBaseiR144.2a ; CE02032 ; WBGene00020092 ; pcf-11

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000654401 – 823Polyadenylation and cleavage factor homolog 11Add BLAST823

Proteomic databases

EPDiQ09345
PaxDbiQ09345
PeptideAtlasiQ09345
PRIDEiQ09345

Expressioni

Gene expression databases

BgeeiWBGene00020092
ExpressionAtlasiQ09345 baseline and differential

Interactioni

GO - Molecular functioni

Protein-protein interaction databases

BioGridi56599, 6 interactors
IntActiQ09345, 12 interactors
STRINGi6239.R144.2a

Structurei

3D structure databases

ProteinModelPortaliQ09345
SMRiQ09345
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini3 – 135CIDPROSITE-ProRule annotationAdd BLAST133

Phylogenomic databases

eggNOGiKOG2071 Eukaryota
ENOG410Y266 LUCA
GeneTreeiENSGT00440000034259
HOGENOMiHOG000020904
InParanoidiQ09345
KOiK14400
OMAiPANNRIF
OrthoDBiEOG091G05E7

Family and domain databases

Gene3Di1.25.40.90, 1 hit
InterProiView protein in InterPro
IPR006569 CID_dom
IPR008942 ENTH_VHS
IPR006903 RNA_pol_II-bd
PfamiView protein in Pfam
PF04818 CTD_bind, 1 hit
SMARTiView protein in SMART
SM00582 RPR, 1 hit
SUPFAMiSSF48464 SSF48464, 1 hit
PROSITEiView protein in PROSITE
PS51391 CID, 1 hit

Sequencei

Sequence statusi: Complete.

Q09345-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MESVESAARD YRETLAELRN NNKTQINLLT ILADDFKKAA PQIVEVIERH
60 70 80 90 100
LTTCSPSQKL LVMYVCDSIL KNVKKPNDYD ALFARKIVSM FEHAFRQGDE
110 120 130 140 150
RIRTSLYRIR VTWASTTLFM PSKLYELDMK INKLDPNWPI SNPQTGRALR
160 170 180 190 200
DDPQVMAPSQ SRPAGNATSP AASTSTNRVF VNPKFIGSST PGAASASKTV
210 220 230 240 250
VEKTKSPGTV NKEKQVKKEP KQDPLDKLLP SSSASKTSSS PAGLKRKSAP
260 270 280 290 300
SEHPNAPIRK KPQQPPKPQT AIDEDLRSIS LTKKPPVPSA QDQDFRPKTL
310 320 330 340 350
KPTSVIGSHA FAPVAAPIRP MIPVPPPVSV APFVPAPPLS SAPPFQHPQQ
360 370 380 390 400
HHPQLPPPPV HQGMGRGYHH NSPPQDPAPI VPVQAPPPQQ HLPAPENVYS
410 420 430 440 450
SEQPKLDVPA NNRIFVDGKA YEVMFVDDTA VIERGGAPHR IYFAGPPRNL
460 470 480 490 500
VIDGIPHLLQ FDTPTQIDIL GSKHMVKFGA PSRELYIGGH PFKGQFGGPP
510 520 530 540 550
IIATINGRRH EIRLTGSAPE VRIEPEPAYH LTHFLHKMRE EKKIEIASEK
560 570 580 590 600
PEKKEDWLSY LKNLRTRNIL PAPARSPSSP RNQTPPPANL PIPGMNNAGQ
610 620 630 640 650
RGGYHNRHQP QQNARWGGAN KQQNIPPPPS DPSPIGSGVE KRSAPPAAIT
660 670 680 690 700
DFNIRLLQIR YDSVVDALIT KRADACKFCG MRLDDSQGKS KEWQDHMDWH
710 720 730 740 750
VKQNLARHGS NNSAAVPYRQ WYPSTSTWLT PRASDETNEQ EADKPEEPLP
760 770 780 790 800
GVASSGVKTK ECSVCGEKFD EYYDDDEETW RLRDTVNVHG KIVHSACASD
810 820
AARSLDNSSF FNDSDIKKEE PFD
Length:823
Mass (Da):91,142
Last modified:November 1, 1997 - v1
Checksum:i18654DB4740FC06A
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
FO080694 Genomic DNA Translation: CCD65870.1
PIRiT16758
RefSeqiNP_498068.1, NM_065667.3
UniGeneiCel.6171

Genome annotation databases

EnsemblMetazoaiR144.2a.1; R144.2a.1; WBGene00020092
R144.2a.2; R144.2a.2; WBGene00020092
GeneIDi246008
KEGGicel:CELE_R144.2
UCSCiR144.2b c. elegans

Similar proteinsi

Entry informationi

Entry nameiPCF11_CAEEL
AccessioniPrimary (citable) accession number: Q09345
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: November 1, 1997
Last modified: May 23, 2018
This is version 109 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase

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