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Entry version 109 (07 Oct 2020)
Sequence version 4 (26 Feb 2020)
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Protein

GYF domain-containing protein gyf-1

Gene

gyf-1

Organism
Caenorhabditis elegans
Status
Reviewed-Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
GYF domain-containing protein gyf-1Curated
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:gyf-1Imported
ORF Names:C18H9.3Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiCaenorhabditis elegans
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri6239 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaMetazoaEcdysozoaNematodaChromadoreaRhabditidaRhabditinaRhabditomorphaRhabditoideaRhabditidaePeloderinaeCaenorhabditis
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001940 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome II

Organism-specific databases

WormBase

More...
WormBasei
C18H9.3a ; CE47928 ; WBGene00016002 ; gyf-1
C18H9.3b ; CE52358 ; WBGene00016002 ; gyf-1
C18H9.3c ; CE52279 ; WBGene00016002 ; gyf-1
C18H9.3d ; CE52212 ; WBGene00016002 ; gyf-1
C18H9.3e ; CE43752 ; WBGene00016002 ; gyf-1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000651881 – 1106GYF domain-containing protein gyf-1Add BLAST1106

Proteomic databases

Encyclopedia of Proteome Dynamics

More...
EPDi
Q09237

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q09237

PeptideAtlas

More...
PeptideAtlasi
Q09237

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

Gene expression databases

Bgee dataBase for Gene Expression Evolution

More...
Bgeei
WBGene00016002, Expressed in multi-cellular organism and 4 other tissues

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q09237, baseline and differential

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGRID)

More...
BioGRIDi
39441, 3 interactors

STRING: functional protein association networks

More...
STRINGi
6239.C18H9.3

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q09237

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini459 – 508GYFPROSITE-ProRule annotationAdd BLAST50

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and domains' section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili584 – 746Sequence analysisAdd BLAST163

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi148 – 263Gly-richPROSITE-ProRule annotationAdd BLAST116
Compositional biasi334 – 399Gln-richPROSITE-ProRule annotationAdd BLAST66
Compositional biasi593 – 750Glu-richPROSITE-ProRule annotationAdd BLAST158
Compositional biasi695 – 749Arg-richPROSITE-ProRule annotationAdd BLAST55

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
KOG1862, Eukaryota

Ensembl GeneTree

More...
GeneTreei
ENSGT00940000168947

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_285799_0_0_1

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q09237

Identification of Orthologs from Complete Genome Data

More...
OMAi
QYMMRRK

Database of Orthologous Groups

More...
OrthoDBi
769617at2759

Family and domain databases

Conserved Domains Database

More...
CDDi
cd00072, GYF, 1 hit

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.1490.40, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR003169, GYF
IPR035445, GYF-like_dom_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02213, GYF, 1 hit

Simple Modular Architecture Research Tool; a protein domain database

More...
SMARTi
View protein in SMART
SM00444, GYF, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF55277, SSF55277, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS50829, GYF, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequences (5)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry describes 5 <p>This subsection of the 'Sequence' section lists the alternative protein sequences (isoforms) that can be generated from the same gene by a single or by the combination of up to four biological events (alternative promoter usage, alternative splicing, alternative initiation and ribosomal frameshifting). Additionally, this section gives relevant information on each alternative protein isoform. This section is only present in reviewed entries, i.e. in UniProtKB/Swiss-Prot.<p><a href='/help/alternative_products' target='_top'>More...</a></p> isoformsi produced by alternative splicing. AlignAdd to basket
Isoform dImported (identifier: Q09237-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the <div> <p><b>What is the canonical sequence?</b><p><a href='/help/canonical_and_isoforms' target='_top'>More...</a></p>canonicali sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MSSVSSAEPT AQQNFNPSCH FRMRPNAANR GGSISSGNNR SSGFGGGGFD
60 70 80 90 100
DGGDEISSSA IAAAAAAVLS SPVVSEFSYT RERLLELAPT GSIMPDALRD
110 120 130 140 150
QLFFNEKNLP LVSNTPLSEH EQKLQHNINS SKAMSLLSHA DRASIAAGAA
160 170 180 190 200
YGSGYGAASG ALQNGQSPTS RWAPKSSWNK GTPDRGTGTT PRGGGSVGRA
210 220 230 240 250
SGAFFAGRGG GRIGGENGFG GATNGGSPAA QNEDSPGTYQ SKFNALRRGG
260 270 280 290 300
GAGSVGRGGS TTGSAFNTRA DALYNPNDPT DRPKAVNPAA TRSESDEEEE
310 320 330 340 350
EGWSKVGSTS RTSTNAAPQS SERPAWARSE SWIQRTQQQQ QQQQQQSTQQ
360 370 380 390 400
QAQPPITLWN NREVGSDSTV WKDRNHMVAA VRKASTENHP PQQQQQQQQR
410 420 430 440 450
SSAPVSAPSR QESESTDVPN LPIPTYPSDP SAWSNNSMGG GIFYQPTPQP
460 470 480 490 500
PAPIVKEEPV QFYYMDPTET RRGPFPKDQM NVWFKAGYFT DESLRVQRGE
510 520 530 540 550
NGEYKTIGDL KKLHGSSTPF EYLEDIEPPR PILPSIPYPS ATNPLYPAAF
560 570 580 590 600
GGVNMWSSMG QPTDVYMMQT NFEQQLVAER NRLLDDHNRR LAEEAEKMAK
610 620 630 640 650
FQEAMYRQLT MQHEQRVREQ ELLLQKRAEE IEKREAESKR EEAARLQKLE
660 670 680 690 700
QEAREIEERK AALEAEDRRK REIEEYNRMC EKKKNEIIAK EAADRMRLEE
710 720 730 740 750
ATERERRRLE AESRVAEEKI RRDRVRAELE AREREEERKR AAERERIARE
760 770 780 790 800
TASLQQQAEL DAAWAGKKIA TVTTSNSAFT GAPKQVSPSG SEESDEWIST
810 820 830 840 850
SKEVKHTKTA PWAAKVEAPQ KSEKTLLEIQ KEEERKFKVE QEKNAKLKAK
860 870 880 890 900
EQASNITSAA AIAGDKSGGL WGASKTWAAP ESNSSKSYVS PFLDGPSLEA
910 920 930 940 950
ANKMALQKKN SQPKIAVPAK SAPTSAKVAT PVKAKATAVA VSSPATNQKT
960 970 980 990 1000
KKTKEQVATD ELQQWFVKRF QQFSTQVDSS TLFDCIMSLE NPNEVEDIVM
1010 1020 1030 1040 1050
SYLDESKTVK EFVREFIKRR IAMRAAGGRP DADDLTSART AAAAPSDSNS
1060 1070 1080 1090 1100
GSNSNSGNGQ GKKKKKTQKQ VLDGNILGFR GTAAADRLNK GEIDAVPSAP

VNPSRR
Length:1,106
Mass (Da):121,158
Last modified:February 26, 2020 - v4
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i8FCD203C0B29051A
GO
Isoform aImported (identifier: Q09237-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     19-22: CHFR → W
     55-122: Missing.

Show »
Length:1,035
Mass (Da):113,487
Checksum:iF205DFA488CCB6F2
GO
Isoform bImported (identifier: Q09237-3) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     55-122: Missing.

Show »
Length:1,038
Mass (Da):113,845
Checksum:i40FE22164031F750
GO
Isoform cImported (identifier: Q09237-4) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     19-22: CHFR → W

Show »
Length:1,103
Mass (Da):120,801
Checksum:iFA326B234E8EC3DA
GO
Isoform eImported (identifier: Q09237-5) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     1-999: Missing.

Show »
Length:107
Mass (Da):11,378
Checksum:i842B36B2B4C6ACDA
GO

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Sequence' section describes the sequence of naturally occurring alternative protein isoform(s). The changes in the amino acid sequence may be due to alternative splicing, alternative promoter usage, alternative initiation, or ribosomal frameshifting.<p><a href='/help/var_seq' target='_top'>More...</a></p>Alternative sequenceiVSP_0604661 – 999Missing in isoform e. CuratedAdd BLAST999
Alternative sequenceiVSP_06046719 – 22CHFR → W in isoform a and isoform c. Curated4
Alternative sequenceiVSP_06046855 – 122Missing in isoform a and isoform b. CuratedAdd BLAST68

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
BX284602 Genomic DNA Translation: CCD65263.2
BX284602 Genomic DNA Translation: SOF58735.1
BX284602 Genomic DNA Translation: SOF58736.1
BX284602 Genomic DNA Translation: SOF58737.1
BX284602 Genomic DNA Translation: SOF58738.1

Protein sequence database of the Protein Information Resource

More...
PIRi
B88188

NCBI Reference Sequences

More...
RefSeqi
NP_495360.2, NM_062959.2 [Q09237-2]

Genome annotation databases

Ensembl metazoan genome annotation project

More...
EnsemblMetazoai
C18H9.3a.1; C18H9.3a.1; WBGene00016002 [Q09237-2]
C18H9.3b.1; C18H9.3b.1; WBGene00016002 [Q09237-3]
C18H9.3c.1; C18H9.3c.1; WBGene00016002 [Q09237-4]
C18H9.3d.1; C18H9.3d.1; WBGene00016002 [Q09237-1]
C18H9.3e.1; C18H9.3e.1; WBGene00016002 [Q09237-5]

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
174103

UCSC genome browser

More...
UCSCi
C18H9.2, c. elegans [Q09237-1]
C18H9.3, c. elegans

Keywords - Coding sequence diversityi

Alternative splicing

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
BX284602 Genomic DNA Translation: CCD65263.2
BX284602 Genomic DNA Translation: SOF58735.1
BX284602 Genomic DNA Translation: SOF58736.1
BX284602 Genomic DNA Translation: SOF58737.1
BX284602 Genomic DNA Translation: SOF58738.1
PIRiB88188
RefSeqiNP_495360.2, NM_062959.2 [Q09237-2]

3D structure databases

SMRiQ09237
ModBaseiSearch...

Protein-protein interaction databases

BioGRIDi39441, 3 interactors
STRINGi6239.C18H9.3

Proteomic databases

EPDiQ09237
PaxDbiQ09237
PeptideAtlasiQ09237

Genome annotation databases

EnsemblMetazoaiC18H9.3a.1; C18H9.3a.1; WBGene00016002 [Q09237-2]
C18H9.3b.1; C18H9.3b.1; WBGene00016002 [Q09237-3]
C18H9.3c.1; C18H9.3c.1; WBGene00016002 [Q09237-4]
C18H9.3d.1; C18H9.3d.1; WBGene00016002 [Q09237-1]
C18H9.3e.1; C18H9.3e.1; WBGene00016002 [Q09237-5]
GeneIDi174103
UCSCiC18H9.2, c. elegans [Q09237-1]
C18H9.3, c. elegans

Organism-specific databases

Comparative Toxicogenomics Database

More...
CTDi
174103
WormBaseiC18H9.3a ; CE47928 ; WBGene00016002 ; gyf-1
C18H9.3b ; CE52358 ; WBGene00016002 ; gyf-1
C18H9.3c ; CE52279 ; WBGene00016002 ; gyf-1
C18H9.3d ; CE52212 ; WBGene00016002 ; gyf-1
C18H9.3e ; CE43752 ; WBGene00016002 ; gyf-1

Phylogenomic databases

eggNOGiKOG1862, Eukaryota
GeneTreeiENSGT00940000168947
HOGENOMiCLU_285799_0_0_1
InParanoidiQ09237
OMAiQYMMRRK
OrthoDBi769617at2759

Miscellaneous databases

Protein Ontology

More...
PROi
PR:Q09237

Gene expression databases

BgeeiWBGene00016002, Expressed in multi-cellular organism and 4 other tissues
ExpressionAtlasiQ09237, baseline and differential

Family and domain databases

CDDicd00072, GYF, 1 hit
Gene3Di3.30.1490.40, 1 hit
InterProiView protein in InterPro
IPR003169, GYF
IPR035445, GYF-like_dom_sf
PfamiView protein in Pfam
PF02213, GYF, 1 hit
SMARTiView protein in SMART
SM00444, GYF, 1 hit
SUPFAMiSSF55277, SSF55277, 1 hit
PROSITEiView protein in PROSITE
PS50829, GYF, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiGYF1_CAEEL
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q09237
Secondary accession number(s): A0A2C9C305
, A0A2C9C367, A0A2C9C3A1, A0A2C9C3E9, Q09482
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1997
Last sequence update: February 26, 2020
Last modified: October 7, 2020
This is version 109 of the entry and version 4 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programCaenorhabditis annotation project

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. Caenorhabditis elegans
    Caenorhabditis elegans: entries, gene names and cross-references to WormBase
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