UniProtKB - Q09237 (GYF1_CAEEL)
Protein
GYF domain-containing protein gyf-1
Gene
gyf-1
Organism
Caenorhabditis elegans
Status
Names & Taxonomyi
Protein namesi | Recommended name: GYF domain-containing protein gyf-1Curated |
Gene namesi | Name:gyf-1Imported ORF Names:C18H9.3Imported |
Organismi | Caenorhabditis elegans |
Taxonomic identifieri | 6239 [NCBI] |
Taxonomic lineagei | Eukaryota › Metazoa › Ecdysozoa › Nematoda › Chromadorea › Rhabditida › Rhabditina › Rhabditomorpha › Rhabditoidea › Rhabditidae › Peloderinae › Caenorhabditis |
Proteomesi |
|
Organism-specific databases
WormBasei | C18H9.3a ; CE47928 ; WBGene00016002 ; gyf-1 C18H9.3b ; CE52358 ; WBGene00016002 ; gyf-1 C18H9.3c ; CE52279 ; WBGene00016002 ; gyf-1 C18H9.3d ; CE52212 ; WBGene00016002 ; gyf-1 C18H9.3e ; CE43752 ; WBGene00016002 ; gyf-1 |
PTM / Processingi
Molecule processing
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
ChainiPRO_0000065188 | 1 – 1106 | GYF domain-containing protein gyf-1Add BLAST | 1106 |
Proteomic databases
EPDi | Q09237 |
PaxDbi | Q09237 |
PeptideAtlasi | Q09237 |
Expressioni
Gene expression databases
Bgeei | WBGene00016002, Expressed in multi-cellular organism and 4 other tissues |
ExpressionAtlasi | Q09237, baseline and differential |
Family & Domainsi
Domains and Repeats
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Domaini | 459 – 508 | GYFPROSITE-ProRule annotationAdd BLAST | 50 |
Coiled coil
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Coiled coili | 584 – 746 | Sequence analysisAdd BLAST | 163 |
Compositional bias
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Compositional biasi | 148 – 263 | Gly-richPROSITE-ProRule annotationAdd BLAST | 116 | |
Compositional biasi | 334 – 399 | Gln-richPROSITE-ProRule annotationAdd BLAST | 66 | |
Compositional biasi | 593 – 750 | Glu-richPROSITE-ProRule annotationAdd BLAST | 158 | |
Compositional biasi | 695 – 749 | Arg-richPROSITE-ProRule annotationAdd BLAST | 55 |
Keywords - Domaini
Coiled coilPhylogenomic databases
eggNOGi | KOG1862, Eukaryota |
GeneTreei | ENSGT00940000168947 |
HOGENOMi | CLU_285799_0_0_1 |
InParanoidi | Q09237 |
OMAi | QYMMRRK |
OrthoDBi | 769617at2759 |
Family and domain databases
CDDi | cd00072, GYF, 1 hit |
Gene3Di | 3.30.1490.40, 1 hit |
InterProi | View protein in InterPro IPR003169, GYF IPR035445, GYF-like_dom_sf |
Pfami | View protein in Pfam PF02213, GYF, 1 hit |
SMARTi | View protein in SMART SM00444, GYF, 1 hit |
SUPFAMi | SSF55277, SSF55277, 1 hit |
PROSITEi | View protein in PROSITE PS50829, GYF, 1 hit |
s (5)i Sequence
Sequence statusi: Complete.
This entry describes 5 produced by isoformsialternative splicing. AlignAdd to basketIsoform dImported (identifier: Q09237-1) [UniParc]FASTAAdd to basket
This isoform has been chosen as the sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry. canonicali
10 20 30 40 50
MSSVSSAEPT AQQNFNPSCH FRMRPNAANR GGSISSGNNR SSGFGGGGFD
60 70 80 90 100
DGGDEISSSA IAAAAAAVLS SPVVSEFSYT RERLLELAPT GSIMPDALRD
110 120 130 140 150
QLFFNEKNLP LVSNTPLSEH EQKLQHNINS SKAMSLLSHA DRASIAAGAA
160 170 180 190 200
YGSGYGAASG ALQNGQSPTS RWAPKSSWNK GTPDRGTGTT PRGGGSVGRA
210 220 230 240 250
SGAFFAGRGG GRIGGENGFG GATNGGSPAA QNEDSPGTYQ SKFNALRRGG
260 270 280 290 300
GAGSVGRGGS TTGSAFNTRA DALYNPNDPT DRPKAVNPAA TRSESDEEEE
310 320 330 340 350
EGWSKVGSTS RTSTNAAPQS SERPAWARSE SWIQRTQQQQ QQQQQQSTQQ
360 370 380 390 400
QAQPPITLWN NREVGSDSTV WKDRNHMVAA VRKASTENHP PQQQQQQQQR
410 420 430 440 450
SSAPVSAPSR QESESTDVPN LPIPTYPSDP SAWSNNSMGG GIFYQPTPQP
460 470 480 490 500
PAPIVKEEPV QFYYMDPTET RRGPFPKDQM NVWFKAGYFT DESLRVQRGE
510 520 530 540 550
NGEYKTIGDL KKLHGSSTPF EYLEDIEPPR PILPSIPYPS ATNPLYPAAF
560 570 580 590 600
GGVNMWSSMG QPTDVYMMQT NFEQQLVAER NRLLDDHNRR LAEEAEKMAK
610 620 630 640 650
FQEAMYRQLT MQHEQRVREQ ELLLQKRAEE IEKREAESKR EEAARLQKLE
660 670 680 690 700
QEAREIEERK AALEAEDRRK REIEEYNRMC EKKKNEIIAK EAADRMRLEE
710 720 730 740 750
ATERERRRLE AESRVAEEKI RRDRVRAELE AREREEERKR AAERERIARE
760 770 780 790 800
TASLQQQAEL DAAWAGKKIA TVTTSNSAFT GAPKQVSPSG SEESDEWIST
810 820 830 840 850
SKEVKHTKTA PWAAKVEAPQ KSEKTLLEIQ KEEERKFKVE QEKNAKLKAK
860 870 880 890 900
EQASNITSAA AIAGDKSGGL WGASKTWAAP ESNSSKSYVS PFLDGPSLEA
910 920 930 940 950
ANKMALQKKN SQPKIAVPAK SAPTSAKVAT PVKAKATAVA VSSPATNQKT
960 970 980 990 1000
KKTKEQVATD ELQQWFVKRF QQFSTQVDSS TLFDCIMSLE NPNEVEDIVM
1010 1020 1030 1040 1050
SYLDESKTVK EFVREFIKRR IAMRAAGGRP DADDLTSART AAAAPSDSNS
1060 1070 1080 1090 1100
GSNSNSGNGQ GKKKKKTQKQ VLDGNILGFR GTAAADRLNK GEIDAVPSAP
VNPSRR
Alternative sequence
Feature key | Position(s) | DescriptionActions | Graphical view | Length |
---|---|---|---|---|
Alternative sequenceiVSP_060466 | 1 – 999 | Missing in isoform e. CuratedAdd BLAST | 999 | |
Alternative sequenceiVSP_060467 | 19 – 22 | CHFR → W in isoform a and isoform c. Curated | 4 | |
Alternative sequenceiVSP_060468 | 55 – 122 | Missing in isoform a and isoform b. CuratedAdd BLAST | 68 |
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX284602 Genomic DNA Translation: CCD65263.2 BX284602 Genomic DNA Translation: SOF58735.1 BX284602 Genomic DNA Translation: SOF58736.1 BX284602 Genomic DNA Translation: SOF58737.1 BX284602 Genomic DNA Translation: SOF58738.1 |
PIRi | B88188 |
RefSeqi | NP_495360.2, NM_062959.2 [Q09237-2] |
Genome annotation databases
EnsemblMetazoai | C18H9.3a.1; C18H9.3a.1; WBGene00016002 [Q09237-2] C18H9.3b.1; C18H9.3b.1; WBGene00016002 [Q09237-3] C18H9.3c.1; C18H9.3c.1; WBGene00016002 [Q09237-4] C18H9.3d.1; C18H9.3d.1; WBGene00016002 [Q09237-1] C18H9.3e.1; C18H9.3e.1; WBGene00016002 [Q09237-5] |
GeneIDi | 174103 |
UCSCi | C18H9.2, c. elegans [Q09237-1] C18H9.3, c. elegans |
Keywords - Coding sequence diversityi
Alternative splicingSimilar proteinsi
Cross-referencesi
Sequence databases
Select the link destinations: EMBLi GenBanki DDBJi Links Updated | BX284602 Genomic DNA Translation: CCD65263.2 BX284602 Genomic DNA Translation: SOF58735.1 BX284602 Genomic DNA Translation: SOF58736.1 BX284602 Genomic DNA Translation: SOF58737.1 BX284602 Genomic DNA Translation: SOF58738.1 |
PIRi | B88188 |
RefSeqi | NP_495360.2, NM_062959.2 [Q09237-2] |
3D structure databases
SMRi | Q09237 |
ModBasei | Search... |
Protein-protein interaction databases
BioGRIDi | 39441, 3 interactors |
STRINGi | 6239.C18H9.3 |
Proteomic databases
EPDi | Q09237 |
PaxDbi | Q09237 |
PeptideAtlasi | Q09237 |
Genome annotation databases
EnsemblMetazoai | C18H9.3a.1; C18H9.3a.1; WBGene00016002 [Q09237-2] C18H9.3b.1; C18H9.3b.1; WBGene00016002 [Q09237-3] C18H9.3c.1; C18H9.3c.1; WBGene00016002 [Q09237-4] C18H9.3d.1; C18H9.3d.1; WBGene00016002 [Q09237-1] C18H9.3e.1; C18H9.3e.1; WBGene00016002 [Q09237-5] |
GeneIDi | 174103 |
UCSCi | C18H9.2, c. elegans [Q09237-1] C18H9.3, c. elegans |
Organism-specific databases
CTDi | 174103 |
WormBasei | C18H9.3a ; CE47928 ; WBGene00016002 ; gyf-1 C18H9.3b ; CE52358 ; WBGene00016002 ; gyf-1 C18H9.3c ; CE52279 ; WBGene00016002 ; gyf-1 C18H9.3d ; CE52212 ; WBGene00016002 ; gyf-1 C18H9.3e ; CE43752 ; WBGene00016002 ; gyf-1 |
Phylogenomic databases
eggNOGi | KOG1862, Eukaryota |
GeneTreei | ENSGT00940000168947 |
HOGENOMi | CLU_285799_0_0_1 |
InParanoidi | Q09237 |
OMAi | QYMMRRK |
OrthoDBi | 769617at2759 |
Miscellaneous databases
PROi | PR:Q09237 |
Gene expression databases
Bgeei | WBGene00016002, Expressed in multi-cellular organism and 4 other tissues |
ExpressionAtlasi | Q09237, baseline and differential |
Family and domain databases
CDDi | cd00072, GYF, 1 hit |
Gene3Di | 3.30.1490.40, 1 hit |
InterProi | View protein in InterPro IPR003169, GYF IPR035445, GYF-like_dom_sf |
Pfami | View protein in Pfam PF02213, GYF, 1 hit |
SMARTi | View protein in SMART SM00444, GYF, 1 hit |
SUPFAMi | SSF55277, SSF55277, 1 hit |
PROSITEi | View protein in PROSITE PS50829, GYF, 1 hit |
ProtoNeti | Search... |
MobiDBi | Search... |
Entry informationi
Entry namei | GYF1_CAEEL | |
Accessioni | Q09237Primary (citable) accession number: Q09237 Secondary accession number(s): A0A2C9C305 Q09482 | |
Entry historyi | Integrated into UniProtKB/Swiss-Prot: | November 1, 1997 |
Last sequence update: | February 26, 2020 | |
Last modified: | October 7, 2020 | |
This is version 109 of the entry and version 4 of the sequence. See complete history. | ||
Entry statusi | Reviewed (UniProtKB/Swiss-Prot) | |
Annotation program | Caenorhabditis annotation project |
Miscellaneousi
Keywords - Technical termi
Reference proteomeDocuments
- Caenorhabditis elegans
Caenorhabditis elegans: entries, gene names and cross-references to WormBase