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UniProtKB - Q08JH0 (Q08JH0_ECOLX)

Entry version 60 (10 Feb 2021)
Sequence version 1 (31 Oct 2006)
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Protein
Submitted name:

Conjugal transfer protein TraE

Gene

traE

Organism
Escherichia coli
Status
Unreviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Protein predictedi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Biological processi

Complete GO annotation on QuickGO ...

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Submitted name:
Conjugal transfer protein TraEImported
Submitted name:
Conjugative transfer proteinImported
Submitted name:
TraE proteinImported
Submitted name:
Type IV conjugative transfer system protein TraEImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:traEImported
Synonyms:traE_1Imported, traE_2Imported
ORF Names:D9J46_23990Imported, DL530_18015Imported, DM382_25050Imported, DW236_22115Imported, E2855_05808Imported, EF082_25610Imported, F7D02_28310Imported, GII66_23910Imported, HV156_25970Imported, HV159_25060Imported, NCTC9111_00203Imported, NCTC9703_05998Imported, UC41_24990Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlasmid pE2855-3Imported
Plasmid pO86A1Imported
Plasmid pRHBSTW-00317_2Imported
Plasmid pRHBSTW-00321_2Imported
Plasmid pSJ7-2Imported
Plasmid pe2855-3 dnaImported
Plasmid prhbstw-00317_2Imported
Plasmid prhbstw-00321_2Imported
Plasmid psj7-2Imported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiEscherichia coliImported
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri562 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Escherichia
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000326765 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Plasmid psj7-2
  • UP000448516 Componenti: Unassembled WGS sequence
  • UP000512409 Componenti: Plasmid prhbstw-00321_2
  • UP000512391 Componenti: Plasmid prhbstw-00317_2
  • UP000272738 Componenti: Plasmid pe2855-3 dna
  • UP000255181 Componenti: Unassembled WGS sequence
  • UP000387783 Componenti: Unassembled WGS sequence
  • UP000032456 Componenti: Unassembled WGS sequence
  • UP000250781 Componenti: Unassembled WGS sequence
  • UP000284643 Componenti: Unassembled WGS sequence
  • UP000341096 Componenti: Unassembled WGS sequence
  • UP000280919 Componenti: Unassembled WGS sequence
  • UP000402978 Componenti: Unassembled WGS sequence

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei12 – 33HelicalSequence analysisAdd BLAST22

GO - Cellular componenti

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Membrane

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Keywords - Domaini

Transmembrane, Transmembrane helixSequence analysis

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR007973, Pilus_assembly_TraE

Pfam protein domain database

More...Pfami		View protein in Pfam
PF05309, TraE, 1 hit

TIGRFAMs; a protein family database

More...TIGRFAMsi		TIGR02761, TraE_TIGR, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q08JH0-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEHGARLSTS RVMAIAFIFM SVLIVLSLSV NVIQGVNNYR LQNEQRTAVT 
        60         70         80         90        100
PMGFNVPFAV SQNSADASYL QQMALSFIAL RLNVSSETVD ASHQALLQYI 
       110        120        130        140        150
RPGAQNQMKV ILAEEAKRIK NDNVNSAFFQ TSVRVWPQYG RVEIRGVLKT 
       160        170        180 
WIGDSKPFTD IKHYILILKR ENGVTWLDNF GETDDEKK
Length:188
Mass (Da):21,238
Last modified:October 31, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4F308E5E75A7EC7D
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
AB255435 Genomic DNA Translation: BAF33967.1
AP018799 Genomic DNA Translation: BBF51313.1
AAAANM010000042 Genomic DNA Translation: EAA1305612.1
AAAATN010000108 Genomic DNA Translation: EAA2071557.1
AAADNO010000043 Genomic DNA Translation: EAB0915679.1
JYEF01000155 Genomic DNA Translation: KJH04995.1
ROEU01000141 Genomic DNA Translation: MGR76086.1
WJFT01000153 Genomic DNA Translation: MRE47069.1
CP051658 Genomic DNA Translation: QJQ71676.1
CP056614 Genomic DNA Translation: QLV23113.1
CP056605 Genomic DNA Translation: QLW14016.1
QRIX01000018 Genomic DNA Translation: RHG94080.1
UASF01000006 Genomic DNA Translation: SPX22302.1
UGEA01000007 Genomic DNA Translation: STL57938.1

NCBI Reference Sequences

More...RefSeqi		WP_000399805.1, NZ_WSWN01000086.1
YP_788064.1, NC_008460.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...EnsemblBacteriai		KJH04995; KJH04995; UC41_24990

Pathosystems Resource Integration Center (PATRIC)

More...PATRICi		fig|562.7000.peg.5262

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
AB255435 Genomic DNA Translation: BAF33967.1
AP018799 Genomic DNA Translation: BBF51313.1
AAAANM010000042 Genomic DNA Translation: EAA1305612.1
AAAATN010000108 Genomic DNA Translation: EAA2071557.1
AAADNO010000043 Genomic DNA Translation: EAB0915679.1
JYEF01000155 Genomic DNA Translation: KJH04995.1
ROEU01000141 Genomic DNA Translation: MGR76086.1
WJFT01000153 Genomic DNA Translation: MRE47069.1
CP051658 Genomic DNA Translation: QJQ71676.1
CP056614 Genomic DNA Translation: QLV23113.1
CP056605 Genomic DNA Translation: QLW14016.1
QRIX01000018 Genomic DNA Translation: RHG94080.1
UASF01000006 Genomic DNA Translation: SPX22302.1
UGEA01000007 Genomic DNA Translation: STL57938.1
RefSeqiWP_000399805.1, NZ_WSWN01000086.1
YP_788064.1, NC_008460.1

3D structure databases

Database of comparative protein structure models

More...ModBasei		Search...

SWISS-MODEL Interactive Workspace

More...SWISS-MODEL-Workspacei		Submit a new modelling project...

Genome annotation databases

EnsemblBacteriaiKJH04995; KJH04995; UC41_24990
PATRICifig|562.7000.peg.5262

Family and domain databases

InterProiView protein in InterPro
IPR007973, Pilus_assembly_TraE
PfamiView protein in Pfam
PF05309, TraE, 1 hit
TIGRFAMsiTIGR02761, TraE_TIGR, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiQ08JH0_ECOLX
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q08JH0
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/TrEMBL: October 31, 2006
Last sequence update: October 31, 2006
Last modified: February 10, 2021
This is version 60 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiUnreviewed (UniProtKB/TrEMBL)

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

PlasmidImported
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