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Protein

29 kDa ribonucleoprotein A, chloroplastic

Gene
N/A
Organism
Nicotiana sylvestris (Wood tobacco) (South American tobacco)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Could be involved in splicing and/or processing of chloroplast RNA's.

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionRibonucleoprotein, RNA-binding
Biological processmRNA processing

Names & Taxonomyi

Protein namesi
Recommended name:
29 kDa ribonucleoprotein A, chloroplastic
Alternative name(s):
CP29A
OrganismiNicotiana sylvestris (Wood tobacco) (South American tobacco)
Taxonomic identifieri4096 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeNicotianoideaeNicotianeaeNicotiana
Proteomesi
  • UP000189701 Componenti: Genome assembly

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, Plastid

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Transit peptidei1 – 58ChloroplastSequence analysisAdd BLAST58
ChainiPRO_000003102559 – 27329 kDa ribonucleoprotein A, chloroplasticAdd BLAST215

Proteomic databases

PRIDEiQ08935

Structurei

3D structure databases

ProteinModelPortaliQ08935
SMRiQ08935
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini87 – 165RRM 1PROSITE-ProRule annotationAdd BLAST79
Domaini188 – 266RRM 2PROSITE-ProRule annotationAdd BLAST79

Region

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Regioni166 – 187Linker (Gly-rich)Add BLAST22

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi43 – 49Poly-Ser7
Compositional biasi59 – 82Asp/Glu-rich (acidic)Add BLAST24

Keywords - Domaini

Repeat, Transit peptide

Phylogenomic databases

KOiK11294

Family and domain databases

Gene3Di3.30.70.330, 2 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 2 hits
SMARTiView protein in SMART
SM00360 RRM, 2 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 2 hits

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q08935-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MASSASSLHF LSLTPQTLPL PKPTSQTTSL SFFSLPPSSL NLSLSSSSSC
60 70 80 90 100
FSSRFVRKVT LSDFDQIEDV EDGDDGVEEE RNFSPDLKIF VGNLPFSADS
110 120 130 140 150
AALAELFERA GNVEMVEVIY DKLTGRSRGF GFVTMSSKEE VEAACQQFNG
160 170 180 190 200
YELDGRALRV NSGPPPEKRE NSSFRGGSRG GGSFDSSNRV YVGNLAWGVD
210 220 230 240 250
QDALETLFSE QGKVVDAKVV YDRDSGRSRG FGFVTYSSAE EVNNAIESLD
260 270
GVDLNGRAIR VSPAEARPPR RQF
Length:273
Mass (Da):29,675
Last modified:November 1, 1996 - v1
Checksum:iF45ADFA183B3F133
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61113 mRNA Translation: CAA43427.1
PIRiS20069
RefSeqiNP_001289491.1, NM_001302562.1
XP_009781507.1, XM_009783205.1

Genome annotation databases

GeneIDi104230409
KEGGinsy:104230409

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X61113 mRNA Translation: CAA43427.1
PIRiS20069
RefSeqiNP_001289491.1, NM_001302562.1
XP_009781507.1, XM_009783205.1

3D structure databases

ProteinModelPortaliQ08935
SMRiQ08935
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ08935

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi104230409
KEGGinsy:104230409

Phylogenomic databases

KOiK11294

Family and domain databases

Gene3Di3.30.70.330, 2 hits
InterProiView protein in InterPro
IPR012677 Nucleotide-bd_a/b_plait_sf
IPR035979 RBD_domain_sf
IPR000504 RRM_dom
PfamiView protein in Pfam
PF00076 RRM_1, 2 hits
SMARTiView protein in SMART
SM00360 RRM, 2 hits
SUPFAMiSSF54928 SSF54928, 2 hits
PROSITEiView protein in PROSITE
PS50102 RRM, 2 hits
ProtoNetiSearch...

Entry informationi

Entry nameiROC1_NICSY
AccessioniPrimary (citable) accession number: Q08935
Entry historyiIntegrated into UniProtKB/Swiss-Prot: January 11, 2001
Last sequence update: November 1, 1996
Last modified: May 23, 2018
This is version 78 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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