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Entry version 85 (12 Aug 2020)
Sequence version 1 (31 Oct 2006)
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Protein

Phosphoribosylformylglycinamidine synthase

Gene

purL

Organism
Shewanella frigidimarina (strain NCIMB 400)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.UniRule annotation

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section describes the metabolic pathway(s) associated with a protein.<p><a href='/help/pathway' target='_top'>More...</a></p>Pathwayi: IMP biosynthesis via de novo pathway

This protein is involved in step 1 of the subpathway that synthesizes 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide.UniRule annotation
Proteins known to be involved in the 2 steps of the subpathway in this organism are:
  1. Phosphoribosylformylglycinamidine synthase (purL)
  2. Phosphoribosylformylglycinamidine cyclo-ligase (purM)
This subpathway is part of the pathway IMP biosynthesis via de novo pathway, which is itself part of Purine metabolism.
View all proteins of this organism that are known to be involved in the subpathway that synthesizes 5-amino-1-(5-phospho-D-ribosyl)imidazole from N(2)-formyl-N(1)-(5-phospho-D-ribosyl)glycinamide, the pathway IMP biosynthesis via de novo pathway and in Purine metabolism.

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the interaction between a single amino acid and another chemical entity. Priority is given to the annotation of physiological ligands.<p><a href='/help/binding' target='_top'>More...</a></p>Binding sitei676ATP; via carbonyl oxygenUniRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi677MagnesiumUniRule annotation1
Metal bindingi716MagnesiumUniRule annotation1
Metal bindingi720MagnesiumUniRule annotation1
Metal bindingi884MagnesiumUniRule annotation1
Binding sitei886ATPUniRule annotation1
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei1133NucleophileUniRule annotation1
Active sitei1258UniRule annotation1
Active sitei1260UniRule annotation1

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes a region in the protein which binds nucleotide phosphates. It always involves more than one amino acid and includes all residues involved in nucleotide-binding.<p><a href='/help/np_bind' target='_top'>More...</a></p>Nucleotide bindingi305 – 316ATPUniRule annotationAdd BLAST12
Nucleotide bindingi384 – 386ATPUniRule annotation3

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionLigase
Biological processPurine biosynthesis
LigandATP-binding, Magnesium, Metal-binding, Nucleotide-binding

Enzyme and pathway databases

BioCyc Collection of Pathway/Genome Databases

More...
BioCyci
SFRI318167:G1G77-1181-MONOMER

UniPathway: a resource for the exploration and annotation of metabolic pathways

More...
UniPathwayi
UPA00074;UER00128

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Phosphoribosylformylglycinamidine synthaseUniRule annotation (EC:6.3.5.3UniRule annotation)
Short name:
FGAM synthaseUniRule annotation
Short name:
FGAMSUniRule annotation
Alternative name(s):
Formylglycinamide ribonucleotide amidotransferaseUniRule annotation
Short name:
FGAR amidotransferaseUniRule annotation
Short name:
FGAR-ATUniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:purLUniRule annotation
Ordered Locus Names:Sfri_1141
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiShewanella frigidimarina (strain NCIMB 400)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri318167 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiBacteriaProteobacteriaGammaproteobacteriaAlteromonadalesShewanellaceaeShewanella
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000000684 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

GO - Cellular componenti

Keywords - Cellular componenti

Cytoplasm

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002645941 – 1293Phosphoribosylformylglycinamidine synthaseAdd BLAST1293

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Monomer.

UniRule annotation

Protein-protein interaction databases

STRING: functional protein association networks

More...
STRINGi
318167.Sfri_1141

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q085S1

Database of comparative protein structure models

More...
ModBasei
Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1040 – 1293Glutamine amidotransferase type-1UniRule annotationAdd BLAST254

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

In the N-terminal section; belongs to the FGAMS family.UniRule annotation

Keywords - Domaini

Glutamine amidotransferase

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
COG0046, Bacteria
COG0047, Bacteria

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
CLU_001031_0_2_6

KEGG Orthology (KO)

More...
KOi
K01952

Identification of Orthologs from Complete Genome Data

More...
OMAi
LSANWMW

Database of Orthologous Groups

More...
OrthoDBi
26038at2

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
3.30.1330.10, 2 hits
3.40.50.880, 1 hit
3.90.650.10, 2 hits

HAMAP database of protein families

More...
HAMAPi
MF_00419, PurL_1, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR029062, Class_I_gatase-like
IPR040707, FGAR-AT_N
IPR017926, GATASE
IPR010073, PurL_large
IPR041609, PurL_linker
IPR010918, PurM-like_C_dom
IPR036676, PurM-like_C_sf
IPR036921, PurM-like_N_sf
IPR036604, PurS-like_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF02769, AIRS_C, 2 hits
PF18072, FGAR-AT_linker, 1 hit
PF18076, FGAR-AT_N, 1 hit

Superfamily database of structural and functional annotation

More...
SUPFAMi
SSF52317, SSF52317, 1 hit
SSF55326, SSF55326, 2 hits
SSF56042, SSF56042, 2 hits
SSF82697, SSF82697, 1 hit

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR01735, FGAM_synt, 1 hit

PROSITE; a protein domain and family database

More...
PROSITEi
View protein in PROSITE
PS51273, GATASE_TYPE_1, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q085S1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEIIRGAPAL SAFRVQKLME ACENAALPVS QIYAEYVHLA SLSEPLDDNE
60 70 80 90 100
RLQLETILTY GPAIESHAPQ GTLLFVTPRP GTISPWSSKA TDIAHNCGLG
110 120 130 140 150
KVSRLERGIA YYVEASVLTA EQQKLLQGLL HDRMVEVMLP AFEAAEVLFA
160 170 180 190 200
RTEPAKFSSV NILAEGRRAL EVANIKLGLA LADDEIDYLI ENFVRLKRNP
210 220 230 240 250
NDIELMMFAQ ANSEHCRHKI FNADWTIDGE VQLKSLFKMI KNTFEVTPDY
260 270 280 290 300
VLSAYKDNAA VMTGSVAGRF FPDPDGIYNY HTEPMHILMK VETHNHPTAI
310 320 330 340 350
SPYPGAATGS GGEIRDEGAT GRGSKPKAGL SGFTVSNLKI PGFVQPWEGD
360 370 380 390 400
YGKPDRIVTP LEIMLEGPLG GAAFNNEFGR PAITGYFRTY EQLVSSHNGV
410 420 430 440 450
EVRGYHKPIM IAGGLGNIRE DHVQKGEITI GAKLIVLGGP AMNIGLGGGA
460 470 480 490 500
ASSMASGQSS EDLDFASVQR ENPEMERRCQ EVIDRCWQLG DTNPIQFIHD
510 520 530 540 550
VGAGGLSNAF PELVNDADRG GVFNLRNVPS DEPGMSPLEI WCNESQERYV
560 570 580 590 600
LSVAPENLQQ FADICARERA PFAVVGEATA EMHLTLADSH FNNKPIDLPL
610 620 630 640 650
EVLLGKAPKM SRDVVTAKAV SPALDQTKIE LKDAVKRILT LPTVADKTFL
660 670 680 690 700
ITIGDRSVTG LVNRDQMVGP WQVPVADCAV TASSYDSYCG EAMSMGERTP
710 720 730 740 750
LALLDFDASA RMAVAESIMN IAGTDIGSFK RIKLSANWMS PAGHPGEDAG
760 770 780 790 800
LYQAVKAIGE DLCPELGITI PVGKDSMSMK TAWEDNGTQK TVTSPMSLVI
810 820 830 840 850
TAFGVVQDIR KTVTPQLRSD KGDSALLMLD LSNGQNRLGG SCLAQVYSEL
860 870 880 890 900
GDIAPTLDKT ANLAGFFEVM QQLVADQAVM AYHDRSDGGL FTTLVEMAFA
910 920 930 940 950
GNTGLTIDLA SLSGTDLERL FNEEIGAVIQ VSAIDAKAIA AQFEAKGVTC
960 970 980 990 1000
HHIGGLQTAD KISINDGERV IFADSRTALR TLWSETTYRM QALRDNPECA
1010 1020 1030 1040 1050
REEYELKQQA DAPGLTVKLG FNPSEDVAAP YILKGVAPKM AILREQGVNS
1060 1070 1080 1090 1100
HVEMAAAFDR AGFESRDVHM SDILSGRISL EEFQGLVACG GFSYGDVLGA
1110 1120 1130 1140 1150
GEGWAKSILF NDRARDEFSR FFERDSSIAL GVCNGCQMLS NLKEIIPGSE
1160 1170 1180 1190 1200
HWPRFVRNRS ERFEARFSLV EVQQNPSVFF EGMVGSRMPI AVSHGEGLVE
1210 1220 1230 1240 1250
FANAQALANA EASGTIALRY VDGHGQIATQ YPENPNGSAN GLTGICTTDG
1260 1270 1280 1290
RVTIMMPHPE RVFRTVANSW HPDNWGEDSP WMRMFRNARV KIG
Length:1,293
Mass (Da):140,532
Last modified:October 31, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i47FF0BB4E625A4F7
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
CP000447 Genomic DNA Translation: ABI70994.1

NCBI Reference Sequences

More...
RefSeqi
WP_011636615.1, NC_008345.1

Genome annotation databases

Ensembl bacterial and archaeal genome annotation project

More...
EnsemblBacteriai
ABI70994; ABI70994; Sfri_1141

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
sfr:Sfri_1141

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
CP000447 Genomic DNA Translation: ABI70994.1
RefSeqiWP_011636615.1, NC_008345.1

3D structure databases

SMRiQ085S1
ModBaseiSearch...

Protein-protein interaction databases

STRINGi318167.Sfri_1141

Genome annotation databases

EnsemblBacteriaiABI70994; ABI70994; Sfri_1141
KEGGisfr:Sfri_1141

Phylogenomic databases

eggNOGiCOG0046, Bacteria
COG0047, Bacteria
HOGENOMiCLU_001031_0_2_6
KOiK01952
OMAiLSANWMW
OrthoDBi26038at2

Enzyme and pathway databases

UniPathwayiUPA00074;UER00128
BioCyciSFRI318167:G1G77-1181-MONOMER

Family and domain databases

Gene3Di3.30.1330.10, 2 hits
3.40.50.880, 1 hit
3.90.650.10, 2 hits
HAMAPiMF_00419, PurL_1, 1 hit
InterProiView protein in InterPro
IPR029062, Class_I_gatase-like
IPR040707, FGAR-AT_N
IPR017926, GATASE
IPR010073, PurL_large
IPR041609, PurL_linker
IPR010918, PurM-like_C_dom
IPR036676, PurM-like_C_sf
IPR036921, PurM-like_N_sf
IPR036604, PurS-like_sf
PfamiView protein in Pfam
PF02769, AIRS_C, 2 hits
PF18072, FGAR-AT_linker, 1 hit
PF18076, FGAR-AT_N, 1 hit
SUPFAMiSSF52317, SSF52317, 1 hit
SSF55326, SSF55326, 2 hits
SSF56042, SSF56042, 2 hits
SSF82697, SSF82697, 1 hit
TIGRFAMsiTIGR01735, FGAM_synt, 1 hit
PROSITEiView protein in PROSITE
PS51273, GATASE_TYPE_1, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPUR4_SHEFN
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q085S1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: December 12, 2006
Last sequence update: October 31, 2006
Last modified: August 12, 2020
This is version 85 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programProkaryotic Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  2. SIMILARITY comments
    Index of protein domains and families
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