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UniProtKB - Q06VN8 (Y043_TNAVC)

Entry version 27 (02 Dec 2020)
Sequence version 1 (31 Oct 2006)
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Protein

Structural protein ORF43

Gene

ORF43

Organism
Trichoplusia ni ascovirus 2c (TnAV-2c)
Status
Reviewed-Annotation score:

Annotation score:1 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Structural protein ORF43
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
ORF Names:ORF43
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiTrichoplusia ni ascovirus 2c (TnAV-2c)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri328615 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiViruses › Varidnaviria › Bamfordvirae › Nucleocytoviricota › Megaviricetes › Pimascovirales › Ascoviridae › Ascovirus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiNoctuidae (owlet moths) [TaxID: 7100]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000001323 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywords - Cellular componenti

Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00003305951 – 977Structural protein ORF43Add BLAST977

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q06VN8

Database of comparative protein structure models

More...ModBasei		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'Family and Domains' section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi385 – 390Poly-Asp6
Compositional biasi547 – 554Poly-Asp8
Compositional biasi673 – 678Poly-Asp6
Compositional biasi805 – 811Poly-Thr7

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the ascovirus HvAV ORF146 family.Curated

Family and domain databases

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR043920, DUF5757

Pfam protein domain database

More...Pfami		View protein in Pfam
PF19061, DUF5757, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q06VN8-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MTIKRNGYNE YISMSSNSSP LLLYDIISLT NGSNDNEIII NFRSHVLNSN 
        60         70         80         90        100
IIELLSGAAP HYFDVRNILV RNMESQKIGA SFTINSITFV SEYMQYFVLN 
       110        120        130        140        150
GNENLPNVYI DERGVVAYRK VWRRFTLGSP MFVFDYDGKL VKFTIAVERA 
       160        170        180        190        200
KEGITVSSIL HTRVRILDAN SEDDIAFISE AIVTMMIYYK NSELEISQYY 
       210        220        230        240        250
AENLYDELPR VRVLRDSKRI RNKTARRIRT TSINDIRTVI PVNNYARQCN 
       260        270        280        290        300
RLPMLVDSID DVPTELRGNT IKFPLHGEGG IDKPKYVYCR YSDAPYPGMM 
       310        320        330        340        350
VNNLAGASKK FPYLPCCYKT SQEVKDVNLA YSRDVMPEVS SVAPNRVQIY 
       360        370        380        390        400
FNTQRLLPCN SFGRSPMCIE KFITGINYFD DRLHDDDDND SVSEYYPTIS 
       410        420        430        440        450
KVTDDVNAST YYCIRGGVQK GPNSIIEAVL RSLQYLDGRD PRTLSITDSI 
       460        470        480        490        500
LNSERLKLRD CINVSAQELY DIPFDKRLDI LSSTQTYLDG FRFVKALQYQ 
       510        520        530        540        550
YDVNIYIYSR NCGPVTRFIY NHNEISLKFE DNDNINKQQQ QQRERNDDDD 
       560        570        580        590        600
DDDDSTLVLP YHNKSSAYID TKIHRKSIVI YIHHGTEATT NATGYPHVEY 
       610        620        630        640        650
IMFRKHKKVV EKLWDVYKAM LPVNITNVYG LSYYEADNDD INETISKRVA 
       660        670        680        690        700
ENCRKKLYVS TGKLLKLVGE NNDGDDDDSF IPKLQVLDRL GKCVQLDEYR 
       710        720        730        740        750
ISSLSDFIEP LPLPIVNENM FYNNPSCLTQ CYGFDAAFKV DRLSRLLLYI 
       760        770        780        790        800
TLYEMTLTGS ITSVYFTINR QRFSELICDS GCVGKLLNNG CVTLQKYTHH 
       810        820        830        840        850
LVSRTTTTTT TISPSISQED HENNIDDSNI TYILVDSSDT AKRLKYNATL 
       860        870        880        890        900
LIKRMTAKEI DNLKLSTHVL PLLRYERDFA LSNTSHDNMV VVTSMDKFTT 
       910        920        930        940        950
KSFDHRYIYK IPSTIIPNIG ESLVLITNES KEQTELVTVT SIENFTRIHD 
       960        970 
HYENSDAIQF KCVVNVWSGA STWKKSV
Length:977
Mass (Da):112,279
Last modified:October 31, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i769658945878975B
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
DQ517337 Genomic DNA Translation: ABF70560.1

NCBI Reference Sequences

More...RefSeqi		YP_803266.1, NC_008518.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...GeneIDi		5141803

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...KEGGi		vg:5141803

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ517337 Genomic DNA Translation: ABF70560.1
RefSeqiYP_803266.1, NC_008518.1

3D structure databases

SMRiQ06VN8
ModBaseiSearch...

Genome annotation databases

GeneIDi5141803
KEGGivg:5141803

Family and domain databases

InterProiView protein in InterPro
IPR043920, DUF5757
PfamiView protein in Pfam
PF19061, DUF5757, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiY043_TNAVC
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q06VN8
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 29, 2008
Last sequence update: October 31, 2006
Last modified: December 2, 2020
This is version 27 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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