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Entry version 44 (11 Dec 2019)
Sequence version 1 (31 Oct 2006)
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Protein

DNA-directed RNA polymerase subunit beta''

Gene

rpoC2

Organism
Jasminum nudiflorum (Winter jasmine)
Status
Reviewed-Annotation score:

Annotation score:3 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Protein inferred from homologyi <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.UniRule annotation

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

<p>This subsection of the 'Function' section provides information relevant to cofactors. A cofactor is any non-protein substance required for a protein to be catalytically active. Some cofactors are inorganic, such as the metal atoms zinc, iron, and copper in various oxidation states. Others, such as most vitamins, are organic.<p><a href='/help/cofactor' target='_top'>More...</a></p>Cofactori

Zn2+UniRule annotationNote: Binds 1 Zn2+ ion per subunit.UniRule annotation

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section indicates at which position the protein binds a given metal ion. The nature of the metal is indicated in the 'Description' field.<p><a href='/help/metal' target='_top'>More...</a></p>Metal bindingi224ZincUniRule annotation1
Metal bindingi295ZincUniRule annotation1
Metal bindingi302ZincUniRule annotation1
Metal bindingi305ZincUniRule annotation1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionNucleotidyltransferase, Transferase
Biological processTranscription
LigandMetal-binding, Zinc

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
DNA-directed RNA polymerase subunit beta''UniRule annotation (EC:2.7.7.6UniRule annotation)
Alternative name(s):
PEPUniRule annotation
Plastid-encoded RNA polymerase subunit beta''UniRule annotation
Short name:
RNA polymerase subunit beta''UniRule annotation
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: 'Name', 'Synonyms', 'Ordered locus names' and 'ORF names'.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:rpoC2UniRule annotation
ORF Names:JNC0181
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section indicates if the gene coding for the protein originates from the hydrogenosome, the mitochondrion, the nucleomorph, different plastids or a plasmid. The absence of this section means that the gene is located in one of the main chromosomal element(s).<p><a href='/help/encoded_on' target='_top'>More...</a></p>Encoded oniPlastid; Chloroplast
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiJasminum nudiflorum (Winter jasmine)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri126431 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaeasteridslamiidsLamialesOleaceaeJasmineaeJasminum

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Chloroplast, DNA-directed RNA polymerase, Plastid

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing or proteolytic cleavage.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00002771931 – 1397DNA-directed RNA polymerase subunit beta''Add BLAST1397

Proteomic databases

PRoteomics IDEntifications database

More...
PRIDEi
Q06RE1

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

In plastids the minimal PEP RNA polymerase catalytic core is composed of four subunits: alpha, beta, beta', and beta''. When a (nuclear-encoded) sigma factor is associated with the core the holoenzyme is formed, which can initiate transcription.

UniRule annotation

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the RNA polymerase beta' chain family. RpoC2 subfamily.UniRule annotation

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.132.30, 1 hit
1.10.274.100, 1 hit

HAMAP database of protein families

More...
HAMAPi
MF_01324 RNApol_bact_RpoC2, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR012756 DNA-dir_RpoC2_beta_pp
IPR042102 RNA_pol_Rpb1_3_sf
IPR007083 RNA_pol_Rpb1_4
IPR007081 RNA_pol_Rpb1_5
IPR038120 Rpb1_funnel_sf

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF05000 RNA_pol_Rpb1_4, 1 hit
PF04998 RNA_pol_Rpb1_5, 2 hits

TIGRFAMs; a protein family database

More...
TIGRFAMsi
TIGR02388 rpoC2_cyan, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

Q06RE1-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MEVLMAERAN LVFHNKVIDG TAMKRLINRL IEHFGMAYTS HILDQVKALG
60 70 80 90 100
FHQATTTSIS LGIDDLLTIP SKRWLVQDAE QQSLVLEKHH HYGNVHAVEK
110 120 130 140 150
LRQSVEIWYA TSEYLRQEMN PNFRMTDPFN PVHIMSFSGA RGNASQVHQL
160 170 180 190 200
IGMRGLMSDP QGQMIDLPIQ SNLREGLSLT EYIISCYGAR KGVVDTAVRT
210 220 230 240 250
SDAGYLTRRL VEVVQHIVVR RTDCGTIRGI SLSPRNGMMP ERVFIQTLMG
260 270 280 290 300
RVLADDIYIG TRCLATRNQD IGIGLVNRFI TFRAQPISIR TPFTCRSASW
310 320 330 340 350
ICRFCYGRSP THGDLVELGE AVGIIAGQSI GEPGTQLTLR TFHTGGVFTG
360 370 380 390 400
GTAEHVRAPS NGKIKFNEDL VHPTRTRHGH PAFLCSIDLY VTIESEDILH
410 420 430 440 450
NVNIPPKSFL LVQNDQYVES EQVIAEICVG TSTLNFKEKV RKHIFSDSDG
460 470 480 490 500
EMHWSTDVYH APEFTYGNVH LLPKTSHLWI LLGGPCRSSR VSLSFHKDQD
510 520 530 540 550
QMNAHSPSIK RRYTSNLSET NDPERQKLFS SYFYGKKKKK NRISDYSNLN
560 570 580 590 600
QILCTGHCNF ISPTTLHQNS DLFSKRRKNK FLIPLQSIQE PENKLMPRSS
610 620 630 640 650
ISIEIPQNGT FRGNSILAYF DDPRYRRKGS GIPQYGTIEM HSIVKKEDLV
660 670 680 690 700
EYRGVKAFRP KYQMKVDRLF FIPEEVHILP RSSSIMVRNN SLIGVDTQLT
710 720 730 740 750
LNIRSRVGGF VRVERKKKRI ELKIFSGDIH FPGETNKISR HSDVLIPPGK
760 770 780 790 800
PNSKESKKWK NGIYVQRITP RKKKFFVLVR PVITYEITDG ININLATLFP
810 820 830 840 850
PDLLQERDNV QLRVVNYILY ENGNPIRGFS HTDSQLVRTC LVLNWDQDKK
860 870 880 890 900
KSASSEEARA SFVEIRTNGL IRHFLRIDLV KSPISYIGKR NDPSGSGLPS
910 920 930 940 950
DNGSGWTNMN PFSSIYSKAR IQQSLNQNQG TIHTLLNRNT GFQSLRILSS
960 970 980 990 1000
SNCSRMGPFN DVIKYHKESI PITLITKDPF IPIKNFKNSL GPFGTAFPIA
1010 1020 1030 1040 1050
NFDSFSHLIT QNRILVNNYL ELDNFKQTFQ VIQYYLMDEN PKIYNPDLGS
1060 1070 1080 1090 1100
NILLNPFNWN WYFYHHTYCQ ETSPIISLGQ FICENVCIAK NAPHLKSGQV
1110 1120 1130 1140 1150
ILVQVASVVI RSAKPYLATP GTTVHGHYGE ILYEGDTLIT FLYEKSRSSD
1160 1170 1180 1190 1200
ITQGLPKVEE VFEVRSIDSI SMNLEKRFKG WNKRITRILG MPWGFLIGAE
1210 1220 1230 1240 1250
LTIVQSRISL VNKIQRVYRS QGVQIHNRHI EIIVRQITSK VLVSEDGMSN
1260 1270 1280 1290 1300
VFSPGELIGL LRAERMGRAL EEAVYYRAIL LGITRASLNT QSFISEASFQ
1310 1320 1330 1340 1350
ETARVLAKAA LRGRIDWLKG LKENVVLGGM IPLGTGFKGL VPPSKQDNNS
1360 1370 1380 1390
SLETKKKNLF EGEMRDIFFH HRKLFDSCRS KNFHDTSEQS LLGFHDS
Length:1,397
Mass (Da):158,717
Last modified:October 31, 2006 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i4DB8AC55303B6005
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

More...
GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
DQ673255 Genomic DNA Translation: ABG74618.1

NCBI Reference Sequences

More...
RefSeqi
YP_778480.1, NC_008407.1

Genome annotation databases

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
4319742

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
DQ673255 Genomic DNA Translation: ABG74618.1
RefSeqiYP_778480.1, NC_008407.1

3D structure databases

Database of comparative protein structure models

More...
ModBasei
Search...

SWISS-MODEL Interactive Workspace

More...
SWISS-MODEL-Workspacei
Submit a new modelling project...

Proteomic databases

PRIDEiQ06RE1

Genome annotation databases

GeneIDi4319742

Family and domain databases

Gene3Di1.10.132.30, 1 hit
1.10.274.100, 1 hit
HAMAPiMF_01324 RNApol_bact_RpoC2, 1 hit
InterProiView protein in InterPro
IPR012756 DNA-dir_RpoC2_beta_pp
IPR042102 RNA_pol_Rpb1_3_sf
IPR007083 RNA_pol_Rpb1_4
IPR007081 RNA_pol_Rpb1_5
IPR038120 Rpb1_funnel_sf
PfamiView protein in Pfam
PF05000 RNA_pol_Rpb1_4, 1 hit
PF04998 RNA_pol_Rpb1_5, 2 hits
TIGRFAMsiTIGR02388 rpoC2_cyan, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...
ProtoNeti
Search...

MobiDB: a database of protein disorder and mobility annotations

More...
MobiDBi
Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiRPOC2_JASNU
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q06RE1
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: February 6, 2007
Last sequence update: October 31, 2006
Last modified: December 11, 2019
This is version 44 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
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