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Protein

Zinc finger and BTB domain-containing protein 16

Gene

ZBTB16

Organism
Homo sapiens (Human)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

Acts as a transcriptional repressor (PubMed:24359566). May play a role in myeloid maturation and in the development and/or maintenance of other differentiated tissues. Probable substrate-recognition component of an E3 ubiquitin-protein ligase complex which mediates the ubiquitination and subsequent proteasomal degradation of target proteins (PubMed:14528312).2 Publications

Pathwayi: protein ubiquitination

This protein is involved in the pathway protein ubiquitination, which is part of Protein modification.
View all proteins of this organism that are known to be involved in the pathway protein ubiquitination and in Protein modification.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri404 – 426C2H2-type 1PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri432 – 454C2H2-type 2PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri461 – 483C2H2-type 3PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri490 – 512C2H2-type 4PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri518 – 540C2H2-type 5PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri546 – 568C2H2-type 6PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri574 – 596C2H2-type 7PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri602 – 624C2H2-type 8PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri630 – 652C2H2-type 9PROSITE-ProRule annotationAdd BLAST23

GO - Molecular functioni

GO - Biological processi

Keywordsi

Molecular functionDNA-binding, Repressor
Biological processTranscription, Transcription regulation, Ubl conjugation pathway
LigandMetal-binding, Zinc

Enzyme and pathway databases

ReactomeiR-HSA-8951664 Neddylation
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
SignaLinkiQ05516
SIGNORiQ05516
UniPathwayi
UPA00143

Protein family/group databases

MoonDBiQ05516 Predicted

Names & Taxonomyi

Protein namesi
Recommended name:
Zinc finger and BTB domain-containing protein 16
Alternative name(s):
Promyelocytic leukemia zinc finger protein
Zinc finger protein 145
Zinc finger protein PLZF
Gene namesi
Name:ZBTB16
Synonyms:PLZF, ZNF145
OrganismiHomo sapiens (Human)
Taxonomic identifieri9606 [NCBI]
Taxonomic lineageiEukaryotaMetazoaChordataCraniataVertebrataEuteleostomiMammaliaEutheriaEuarchontogliresPrimatesHaplorrhiniCatarrhiniHominidaeHomo
Proteomesi
  • UP000005640 Componenti: Chromosome 11

Organism-specific databases

EuPathDBiHostDB:ENSG00000109906.13
HGNCiHGNC:12930 ZBTB16
MIMi176797 gene
neXtProtiNX_Q05516

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

Pathology & Biotechi

Involvement in diseasei

Skeletal defects, genital hypoplasia, and mental retardation (SGYMR)1 Publication
The disease is caused by mutations affecting the gene represented in this entry.
Disease descriptionA disorder characterized by mental retardation, craniofacial dysmorphism, microcephaly and short stature. Additional features include absence of the thumbs, hypoplasia of the radii and ulnae, additional vertebrae and ribs, retarded bone age and genital hypoplasia.
See also OMIM:612447
Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_054912617M → V in SGYMR. 1 PublicationCorresponds to variant dbSNP:rs121434606EnsemblClinVar.1
A chromosomal aberration involving ZBTB16 may be a cause of acute promyelocytic leukemia (APL). Translocation t(11;17)(q32;q21) with RARA.1 Publication

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sitei394 – 395Breakpoint for translocation to form PLZF-RAR-alpha oncogene2

Keywords - Diseasei

Disease mutation, Mental retardation, Proto-oncogene

Organism-specific databases

DisGeNETi7704
MalaCardsiZBTB16
MIMi612447 phenotype
OpenTargetsiENSG00000109906
Orphaneti520 Acute promyelocytic leukemia
99861 Precursor T-cell acute lymphoblastic leukemia
PharmGKBiPA37517

Polymorphism and mutation databases

BioMutaiZBTB16
DMDMi90109930

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00000477291 – 673Zinc finger and BTB domain-containing protein 16Add BLAST673

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Modified residuei76Phosphoserine; by PDPK1Sequence analysis1
Modified residuei184Phosphoserine; by PDPK1Sequence analysis1
Modified residuei197Phosphoserine; by PDPK1Sequence analysis1
Modified residuei256Phosphoserine; by PDPK1Sequence analysis1
Modified residuei282Phosphothreonine; by PDPK1Sequence analysis1
Modified residuei628Phosphoserine; by PDPK1Sequence analysis1

Keywords - PTMi

Phosphoprotein

Proteomic databases

EPDiQ05516
PaxDbiQ05516
PeptideAtlasiQ05516
PRIDEiQ05516
ProteomicsDBi58332
58333 [Q05516-2]

PTM databases

iPTMnetiQ05516
PhosphoSitePlusiQ05516

Expressioni

Tissue specificityi

Within the hematopoietic system, PLZF is expressed in bone marrow, early myeloid cell lines and peripheral blood mononuclear cells. Also expressed in the ovary, and at lower levels, in the kidney and lung.

Inductioni

By retinoic acid.

Gene expression databases

BgeeiENSG00000109906 Expressed in 223 organ(s), highest expression level in upper lobe of lung
CleanExiHS_ZBTB16
ExpressionAtlasiQ05516 baseline and differential
GenevisibleiQ05516 HS

Organism-specific databases

HPAiCAB004540
HPA001499

Interactioni

Subunit structurei

Binds EPN1 (PubMed:11161217). Interacts with ZBTB32 and CUL3 (PubMed:10572087, PubMed:14528312). Interacts with ATP7B (PubMed:16676348). Interacts (via C2H2-type zinc finger domains 1 and 2) with RNF112 (PubMed:24359566).5 Publications

Binary interactionsi

GO - Molecular functioni

Protein-protein interaction databases

BioGridi113498, 124 interactors
DIPiDIP-2654N
IntActiQ05516, 116 interactors
MINTiQ05516
STRINGi9606.ENSP00000338157

Structurei

Secondary structure

1673
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

ProteinModelPortaliQ05516
SMRiQ05516
ModBaseiSearch...
MobiDBiSearch...

Miscellaneous databases

EvolutionaryTraceiQ05516

Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Domaini34 – 96BTBPROSITE-ProRule annotationAdd BLAST63

Sequence similaritiesi

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri404 – 426C2H2-type 1PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri432 – 454C2H2-type 2PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri461 – 483C2H2-type 3PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri490 – 512C2H2-type 4PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri518 – 540C2H2-type 5PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri546 – 568C2H2-type 6PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri574 – 596C2H2-type 7PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri602 – 624C2H2-type 8PROSITE-ProRule annotationAdd BLAST23
Zinc fingeri630 – 652C2H2-type 9PROSITE-ProRule annotationAdd BLAST23

Keywords - Domaini

Repeat, Zinc-finger

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00530000063338
HOGENOMiHOG000130800
HOVERGENiHBG057844
InParanoidiQ05516
KOiK10055
OMAiPLGEQCS
OrthoDBiEOG091G11X6
PhylomeDBiQ05516
TreeFamiTF350825

Family and domain databases

InterProiView protein in InterPro
IPR000210 BTB/POZ_dom
IPR011333 SKP1/BTB/POZ_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00651 BTB, 1 hit
PF00096 zf-C2H2, 3 hits
SMARTiView protein in SMART
SM00225 BTB, 1 hit
SM00355 ZnF_C2H2, 9 hits
SUPFAMiSSF54695 SSF54695, 1 hit
SSF57667 SSF57667, 4 hits
PROSITEiView protein in PROSITE
PS50097 BTB, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 8 hits
PS50157 ZINC_FINGER_C2H2_2, 9 hits

Sequences (2+)i

Sequence statusi: Complete.

This entry describes 2 isoformsi produced by alternative splicing. AlignAdd to basket

This entry has 2 described isoforms and 3 potential isoforms that are computationally mapped.Show allAlign All

Isoform PLZFB (identifier: Q05516-1) [UniParc]FASTAAdd to basket

This isoform has been chosen as the 'canonical' sequence. All positional information in this entry refers to it. This is also the sequence that appears in the downloadable versions of the entry.

« Hide
        10         20         30         40         50
MDLTKMGMIQ LQNPSHPTGL LCKANQMRLA GTLCDVVIMV DSQEFHAHRT
60 70 80 90 100
VLACTSKMFE ILFHRNSQHY TLDFLSPKTF QQILEYAYTA TLQAKAEDLD
110 120 130 140 150
DLLYAAEILE IEYLEEQCLK MLETIQASDD NDTEATMADG GAEEEEDRKA
160 170 180 190 200
RYLKNIFISK HSSEESGYAS VAGQSLPGPM VDQSPSVSTS FGLSAMSPTK
210 220 230 240 250
AAVDSLMTIG QSLLQGTLQP PAGPEEPTLA GGGRHPGVAE VKTEMMQVDE
260 270 280 290 300
VPSQDSPGAA ESSISGGMGD KVEERGKEGP GTPTRSSVIT SARELHYGRE
310 320 330 340 350
ESAEQVPPPA EAGQAPTGRP EHPAPPPEKH LGIYSVLPNH KADAVLSMPS
360 370 380 390 400
SVTSGLHVQP ALAVSMDFST YGGLLPQGFI QRELFSKLGE LAVGMKSESR
410 420 430 440 450
TIGEQCSVCG VELPDNEAVE QHRKLHSGMK TYGCELCGKR FLDSLRLRMH
460 470 480 490 500
LLAHSAGAKA FVCDQCGAQF SKEDALETHR QTHTGTDMAV FCLLCGKRFQ
510 520 530 540 550
AQSALQQHME VHAGVRSYIC SECNRTFPSH TALKRHLRSH TGDHPYECEF
560 570 580 590 600
CGSCFRDEST LKSHKRIHTG EKPYECNGCG KKFSLKHQLE THYRVHTGEK
610 620 630 640 650
PFECKLCHQR SRDYSAMIKH LRTHNGASPY QCTICTEYCP SLSSMQKHMK
660 670
GHKPEEIPPD WRIEKTYLYL CYV
Length:673
Mass (Da):74,274
Last modified:March 7, 2006 - v2
Checksum:i51F8E361FA31239E
GO
Isoform PLZFA (identifier: Q05516-2) [UniParc]FASTAAdd to basket

The sequence of this isoform differs from the canonical sequence as follows:
     255-377: Missing.

Show »
Length:550
Mass (Da):61,601
Checksum:i1051E16C91FDC089
GO

Computationally mapped potential isoform sequencesi

There are 3 potential isoforms mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
F5H6C3F5H6C3_HUMAN
Zinc finger and BTB domain-containi...
ZBTB16
115Annotation score:
F5H5Y7F5H5Y7_HUMAN
Zinc finger and BTB domain-containi...
ZBTB16
148Annotation score:
H0YGW2H0YGW2_HUMAN
Zinc finger and BTB domain-containi...
ZBTB16
55Annotation score:

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti580G → D in CAA79489 (PubMed:8384553).Curated1

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Natural variantiVAR_054912617M → V in SGYMR. 1 PublicationCorresponds to variant dbSNP:rs121434606EnsemblClinVar.1

Alternative sequence

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Alternative sequenceiVSP_006896255 – 377Missing in isoform PLZFA. CuratedAdd BLAST123

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z19002 mRNA Translation: CAA79489.1
AF060568 Genomic DNA Translation: AAD03619.1
BC026902 mRNA Translation: AAH26902.1
BC029812 mRNA Translation: AAH29812.1
S60093 Genomic DNA Translation: AAC60590.2
CCDSiCCDS8367.1 [Q05516-1]
PIRiS36336
RefSeqiNP_001018011.1, NM_001018011.1 [Q05516-1]
NP_005997.2, NM_006006.4 [Q05516-1]
XP_016873746.1, XM_017018257.1
XP_016873747.1, XM_017018258.1
XP_016873748.1, XM_017018259.1 [Q05516-1]
UniGeneiHs.591945
Hs.682144

Genome annotation databases

EnsembliENST00000335953; ENSP00000338157; ENSG00000109906 [Q05516-1]
ENST00000392996; ENSP00000376721; ENSG00000109906 [Q05516-1]
GeneIDi7704
KEGGihsa:7704
UCSCiuc001pop.4 human [Q05516-1]

Keywords - Coding sequence diversityi

Alternative splicing, Chromosomal rearrangement

Similar proteinsi

Cross-referencesi

Web resourcesi

Atlas of Genetics and Cytogenetics in Oncology and Haematology

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z19002 mRNA Translation: CAA79489.1
AF060568 Genomic DNA Translation: AAD03619.1
BC026902 mRNA Translation: AAH26902.1
BC029812 mRNA Translation: AAH29812.1
S60093 Genomic DNA Translation: AAC60590.2
CCDSiCCDS8367.1 [Q05516-1]
PIRiS36336
RefSeqiNP_001018011.1, NM_001018011.1 [Q05516-1]
NP_005997.2, NM_006006.4 [Q05516-1]
XP_016873746.1, XM_017018257.1
XP_016873747.1, XM_017018258.1
XP_016873748.1, XM_017018259.1 [Q05516-1]
UniGeneiHs.591945
Hs.682144

3D structure databases

Select the link destinations:
PDBei
RCSB PDBi
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
1BUOX-ray1.90A6-126[»]
1CS3X-ray2.00A7-122[»]
ProteinModelPortaliQ05516
SMRiQ05516
ModBaseiSearch...
MobiDBiSearch...

Protein-protein interaction databases

BioGridi113498, 124 interactors
DIPiDIP-2654N
IntActiQ05516, 116 interactors
MINTiQ05516
STRINGi9606.ENSP00000338157

Protein family/group databases

MoonDBiQ05516 Predicted

PTM databases

iPTMnetiQ05516
PhosphoSitePlusiQ05516

Polymorphism and mutation databases

BioMutaiZBTB16
DMDMi90109930

Proteomic databases

EPDiQ05516
PaxDbiQ05516
PeptideAtlasiQ05516
PRIDEiQ05516
ProteomicsDBi58332
58333 [Q05516-2]

Protocols and materials databases

DNASUi7704
Structural Biology KnowledgebaseSearch...

Genome annotation databases

EnsembliENST00000335953; ENSP00000338157; ENSG00000109906 [Q05516-1]
ENST00000392996; ENSP00000376721; ENSG00000109906 [Q05516-1]
GeneIDi7704
KEGGihsa:7704
UCSCiuc001pop.4 human [Q05516-1]

Organism-specific databases

CTDi7704
DisGeNETi7704
EuPathDBiHostDB:ENSG00000109906.13
GeneCardsiZBTB16
HGNCiHGNC:12930 ZBTB16
HPAiCAB004540
HPA001499
MalaCardsiZBTB16
MIMi176797 gene
612447 phenotype
neXtProtiNX_Q05516
OpenTargetsiENSG00000109906
Orphaneti520 Acute promyelocytic leukemia
99861 Precursor T-cell acute lymphoblastic leukemia
PharmGKBiPA37517
GenAtlasiSearch...

Phylogenomic databases

eggNOGiKOG1721 Eukaryota
COG5048 LUCA
GeneTreeiENSGT00530000063338
HOGENOMiHOG000130800
HOVERGENiHBG057844
InParanoidiQ05516
KOiK10055
OMAiPLGEQCS
OrthoDBiEOG091G11X6
PhylomeDBiQ05516
TreeFamiTF350825

Enzyme and pathway databases

UniPathwayi
UPA00143

ReactomeiR-HSA-8951664 Neddylation
R-HSA-983168 Antigen processing: Ubiquitination & Proteasome degradation
SignaLinkiQ05516
SIGNORiQ05516

Miscellaneous databases

ChiTaRSiZBTB16 human
EvolutionaryTraceiQ05516
GeneWikiiZinc_finger_and_BTB_domain-containing_protein_16
GenomeRNAii7704
PROiPR:Q05516
SOURCEiSearch...

Gene expression databases

BgeeiENSG00000109906 Expressed in 223 organ(s), highest expression level in upper lobe of lung
CleanExiHS_ZBTB16
ExpressionAtlasiQ05516 baseline and differential
GenevisibleiQ05516 HS

Family and domain databases

InterProiView protein in InterPro
IPR000210 BTB/POZ_dom
IPR011333 SKP1/BTB/POZ_sf
IPR036236 Znf_C2H2_sf
IPR013087 Znf_C2H2_type
PfamiView protein in Pfam
PF00651 BTB, 1 hit
PF00096 zf-C2H2, 3 hits
SMARTiView protein in SMART
SM00225 BTB, 1 hit
SM00355 ZnF_C2H2, 9 hits
SUPFAMiSSF54695 SSF54695, 1 hit
SSF57667 SSF57667, 4 hits
PROSITEiView protein in PROSITE
PS50097 BTB, 1 hit
PS00028 ZINC_FINGER_C2H2_1, 8 hits
PS50157 ZINC_FINGER_C2H2_2, 9 hits
ProtoNetiSearch...

Entry informationi

Entry nameiZBT16_HUMAN
AccessioniPrimary (citable) accession number: Q05516
Secondary accession number(s): Q8TAL4
Entry historyiIntegrated into UniProtKB/Swiss-Prot: November 1, 1995
Last sequence update: March 7, 2006
Last modified: November 7, 2018
This is version 203 of the entry and version 2 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programChordata Protein Annotation Program
DisclaimerAny medical or genetic information present in this entry is provided for research, educational and informational purposes only. It is not in any way intended to be used as a substitute for professional medical advice, diagnosis, treatment or care.

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. SIMILARITY comments
    Index of protein domains and families
  2. Human entries with polymorphisms or disease mutations
    List of human entries with polymorphisms or disease mutations
  3. Human polymorphisms and disease mutations
    Index of human polymorphisms and disease mutations
  4. MIM cross-references
    Online Mendelian Inheritance in Man (MIM) cross-references in UniProtKB/Swiss-Prot
  5. PATHWAY comments
    Index of metabolic and biosynthesis pathways
  6. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  7. Human chromosome 11
    Human chromosome 11: entries, gene names and cross-references to MIM
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