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Protein

14.7 kDa protein

Gene

ORF6

Organism
Shallot virus X (ShVX)
Status
Reviewed-Annotation score: -Protein predictedi

Functioni

May act as a regulatory factor during viral transcription.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri65 – 94C4-typeSequence analysisAdd BLAST30

GO - Molecular functioni

Keywordsi

Molecular functionDNA-binding
LigandMetal-binding, Zinc

Names & Taxonomyi

Protein namesi
Recommended name:
14.7 kDa protein
Alternative name(s):
Putative nucleic acid-binding protein
Gene namesi
ORF Names:ORF6
OrganismiShallot virus X (ShVX)
Taxonomic identifieri31770 [NCBI]
Taxonomic lineageiVirusesssRNA virusesssRNA positive-strand viruses, no DNA stageTymoviralesAlphaflexiviridaeAllexivirus
Virus hostiAllium cepa var. aggregatum (Shallot) (Allium ascalonicum) [TaxID: 28911]
Proteomesi
  • UP000001663 Componenti: Genome

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00002226581 – 12814.7 kDa proteinAdd BLAST128

Structurei

3D structure databases

SMRiQ04580
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Compositional biasi52 – 64Arg/Lys-rich (basic)Add BLAST13

Zinc finger

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Zinc fingeri65 – 94C4-typeSequence analysisAdd BLAST30

Keywords - Domaini

Zinc-finger

Family and domain databases

InterProiView protein in InterPro
IPR008891 Viral_NABP
PfamiView protein in Pfam
PF05515 Viral_NABP, 1 hit

Sequencei

Sequence statusi: Complete.

Q04580-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MHPHDLNLLC CLHFSKPSLP NDLKTLLFRA CETSCKLNRR LLDNKPFQGT
60 70 80 90 100
SKCAKRRRAK RYNRCFDCGA YLYDDHVCKR FTSRSNSDCL SVIHQGPAKL
110 120
YAEGAYRANS DAEQLIMNDM LLIKSLKL
Length:128
Mass (Da):14,742
Last modified:June 1, 1994 - v1
Checksum:i3CDC51CE35A6AE7E
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M97264 Genomic RNA Translation: AAA47792.1
PIRiJQ1739
RefSeqiNP_620653.1, NC_003795.1

Genome annotation databases

GeneIDi944366
KEGGivg:944366

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M97264 Genomic RNA Translation: AAA47792.1
PIRiJQ1739
RefSeqiNP_620653.1, NC_003795.1

3D structure databases

SMRiQ04580
ModBaseiSearch...
MobiDBiSearch...

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Genome annotation databases

GeneIDi944366
KEGGivg:944366

Family and domain databases

InterProiView protein in InterPro
IPR008891 Viral_NABP
PfamiView protein in Pfam
PF05515 Viral_NABP, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiVNBP_SHVX
AccessioniPrimary (citable) accession number: Q04580
Entry historyiIntegrated into UniProtKB/Swiss-Prot: June 1, 1994
Last sequence update: June 1, 1994
Last modified: June 20, 2018
This is version 48 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

Miscellaneousi

Keywords - Technical termi

Complete proteome, Reference proteome
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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