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Protein

40S ribosomal protein S13

Gene

RpS13

Organism
Drosophila melanogaster (Fruit fly)
Status
Reviewed-Annotation score: -Experimental evidence at protein leveli

Functioni

GO - Molecular functioni

GO - Biological processi

  • cytoplasmic translation Source: FlyBase

Keywordsi

Molecular functionRibonucleoprotein, Ribosomal protein

Enzyme and pathway databases

ReactomeiR-DME-156827 L13a-mediated translational silencing of Ceruloplasmin expression
R-DME-1799339 SRP-dependent cotranslational protein targeting to membrane
R-DME-6791226 Major pathway of rRNA processing in the nucleolus and cytosol
R-DME-72649 Translation initiation complex formation
R-DME-72689 Formation of a pool of free 40S subunits
R-DME-72695 Formation of the ternary complex, and subsequently, the 43S complex
R-DME-72702 Ribosomal scanning and start codon recognition
R-DME-72706 GTP hydrolysis and joining of the 60S ribosomal subunit
R-DME-975956 Nonsense Mediated Decay (NMD) independent of the Exon Junction Complex (EJC)
R-DME-975957 Nonsense Mediated Decay (NMD) enhanced by the Exon Junction Complex (EJC)

Names & Taxonomyi

Protein namesi
Recommended name:
40S ribosomal protein S13
Gene namesi
Name:RpS13
Synonyms:M(2)32A, Rp17
ORF Names:CG13389
OrganismiDrosophila melanogaster (Fruit fly)
Taxonomic identifieri7227 [NCBI]
Taxonomic lineageiEukaryotaMetazoaEcdysozoaArthropodaHexapodaInsectaPterygotaNeopteraHolometabolaDipteraBrachyceraMuscomorphaEphydroideaDrosophilidaeDrosophilaSophophora
Proteomesi
  • UP000000803 Componenti: Chromosome 2L

Organism-specific databases

FlyBaseiFBgn0010265 RpS13

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertionGraphics by Christian Stolte; Source: COMPARTMENTS

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Initiator methionineiRemovedBy similarity
ChainiPRO_00001156762 – 15140S ribosomal protein S13Add BLAST150

Proteomic databases

PaxDbiQ03334
PRIDEiQ03334

Expressioni

Gene expression databases

BgeeiFBgn0010265
ExpressionAtlasiQ03334 baseline and differential
GenevisibleiQ03334 DM

Interactioni

Protein-protein interaction databases

BioGridi60275, 25 interactors
DIPiDIP-17858N
IntActiQ03334, 21 interactors
STRINGi7227.FBpp0079328

Structurei

3D structure databases

ProteinModelPortaliQ03334
SMRiQ03334
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Sequence similaritiesi

Phylogenomic databases

eggNOGiKOG0400 Eukaryota
COG0184 LUCA
InParanoidiQ03334
KOiK02953
OMAiWHLVKKA
OrthoDBiEOG091G0X8F
PhylomeDBiQ03334

Family and domain databases

CDDicd00353 Ribosomal_S15p_S13e, 1 hit
HAMAPiMF_01343_A Ribosomal_S15_A, 1 hit
InterProiView protein in InterPro
IPR012606 Ribosomal_S13/S15_N
IPR000589 Ribosomal_S15
IPR023029 Ribosomal_S15P
IPR009068 S15_NS1_RNA-bd
PANTHERiPTHR11885 PTHR11885, 1 hit
PfamiView protein in Pfam
PF08069 Ribosomal_S13_N, 1 hit
PF00312 Ribosomal_S15, 1 hit
SMARTiView protein in SMART
SM01386 Ribosomal_S13_N, 1 hit
SM01387 Ribosomal_S15, 1 hit
SUPFAMiSSF47060 SSF47060, 1 hit
PROSITEiView protein in PROSITE
PS00362 RIBOSOMAL_S15, 1 hit

Sequencei

Sequence statusi: Complete.

Sequence processingi: The displayed sequence is further processed into a mature form.

Q03334-1 [UniParc]FASTAAdd to basket

« Hide

        10         20         30         40         50
MGRMHAPGKG ISQSALPYRR TVPSWLKLNA DDVKEQIKKL GKKGLTPSKI
60 70 80 90 100
GIILRDSHGV AQVRFVNGNK ILRIMKSVGL KPDIPEDLYH MIKKAVAIRK
110 120 130 140 150
HLERNRKDKD GKFRLILVES RIHRLARYYK TKSVLPPNWK YESSTASALV

A
Length:151
Mass (Da):17,178
Last modified:January 23, 2007 - v3
Checksum:i498306F4F14B76F8
GO

Experimental Info

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Sequence conflicti40 – 49LGKKGLTPSK → AGQEGSDSLQ in CAA79496 (PubMed:8506150).Curated10

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
Z19052 mRNA Translation: CAA79496.1
X91853 Genomic DNA Translation: CAA62964.1
X91854 mRNA Translation: CAA62965.1
AE014134 Genomic DNA Translation: AAF52649.1
AE014134 Genomic DNA Translation: ABC65883.1
AY058536 mRNA Translation: AAL13765.1
PIRiS70391 S33684
RefSeqiNP_001033885.1, NM_001038796.3
NP_001285747.1, NM_001298818.1
NP_476938.1, NM_057590.5
UniGeneiDm.3535

Genome annotation databases

EnsemblMetazoaiFBtr0079724; FBpp0079328; FBgn0010265
FBtr0100541; FBpp0099990; FBgn0010265
FBtr0346454; FBpp0312104; FBgn0010265
GeneIDi34149
KEGGidme:Dmel_CG13389

Similar proteinsi

Entry informationi

Entry nameiRS13_DROME
AccessioniPrimary (citable) accession number: Q03334
Secondary accession number(s): A4V0F6, Q9VLN5
Entry historyiIntegrated into UniProtKB/Swiss-Prot: October 1, 1993
Last sequence update: January 23, 2007
Last modified: July 18, 2018
This is version 147 of the entry and version 3 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programDrosophila annotation project

Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. Drosophila
    Drosophila: entries, gene names and cross-references to FlyBase
  2. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  3. Ribosomal proteins
    Ribosomal proteins families and list of entries
  4. SIMILARITY comments
    Index of protein domains and families

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