Ribonuclease 3

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functionⁱ

Miscellaneous

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityⁱ

• Endonucleolytic cleavage to 5'-phosphomonoester. EC:3.1.26.3

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functionⁱ

• double-stranded RNA binding Source: GO_Central <p>Inferred from Biological aspect of Ancestor</p> <p>A type of phylogenetic evidence whereby an aspect of a descendent is inferred through the characterization of an aspect of a ancestral gene.</p> <p>More information in the <a href="http://geneontology.org/page/guide%2Dgo%2Devidence%2Dcodes#iba">GO evidence code guide</a></p> Inferred from biological aspect of ancestorⁱ
  • "Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium."
    Gaudet P., Livstone M.S., Lewis S.E., Thomas P.D.
    Brief Bioinform 12:449-462(2011) [PubMed] [Europe PMC] [Abstract]
• ribonuclease III activity Source: SGD <p>Inferred from Direct Assay</p> <p>Used to indicate a direct assay for the function, process or component indicated by the GO term.</p> <p>More information in the <a href="http://geneontology.org/page/guide%2Dgo%2Devidence%2Dcodes#ida">GO evidence code guide</a></p> Inferred from direct assayⁱ
  • "A conserved major groove antideterminant for Saccharomyces cerevisiae RNase III recognition."
    Sam M., Henras A.K., Chanfreau G.
    Biochemistry 44:4181-4187(2005) [PubMed] [Europe PMC] [Abstract]

GO - Biological processⁱ

• box C/D snoRNA processing Source: SGD <p>Inferred from Mutant Phenotype</p> <p>Describes annotations that are concluded from looking at variations or changes in a gene product such as mutations or abnormal levels and includes techniques such as knockouts, overexpression, anti-sense experiments and use of specific protein inhibitors.</p> <p>More information in the <a href="http://geneontology.org/page/guide%2Dgo%2Devidence%2Dcodes#imp">GO evidence code guide</a></p> Inferred from mutant phenotypeⁱ
  • "Intrinsic dynamics of an extended hydrophobic core in the S. cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites."
    Hartman E., Wang Z., Zhang Q., Roy K., Chanfreau G., Feigon J.
    J Mol Biol 425:546-562(2013) [PubMed] [Europe PMC] [Abstract]
• box H/ACA snoRNA processing Source: SGDInferred from mutant phenotypeⁱ
  • "Intrinsic dynamics of an extended hydrophobic core in the S. cerevisiae RNase III dsRBD contributes to recognition of specific RNA binding sites."
    Hartman E., Wang Z., Zhang Q., Roy K., Chanfreau G., Feigon J.
    J Mol Biol 425:546-562(2013) [PubMed] [Europe PMC] [Abstract]
• chromatin organization Source: SGDInferred from mutant phenotypeⁱ
  • "Deletion of Rnt1p alters the proportion of open versus closed rRNA gene repeats in yeast."
    Catala M., Tremblay M., Samson E., Conconi A., Abou Elela S.
    Mol Cell Biol 28:619-629(2008) [PubMed] [Europe PMC] [Abstract]
• nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay Source: SGDInferred from direct assayⁱ
  • "RNase III-dependent regulation of yeast telomerase."
    Larose S., Laterreur N., Ghazal G., Gagnon J., Wellinger R.J., Elela S.A.
    J Biol Chem 282:4373-4381(2007) [PubMed] [Europe PMC] [Abstract]
• pre-miRNA processing Source: GO_CentralInferred from biological aspect of ancestorⁱ
  • "Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium."
    Gaudet P., Livstone M.S., Lewis S.E., Thomas P.D.
    Brief Bioinform 12:449-462(2011) [PubMed] [Europe PMC] [Abstract]
• primary miRNA processing Source: GO_CentralInferred from biological aspect of ancestorⁱ
  • "Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium."
    Gaudet P., Livstone M.S., Lewis S.E., Thomas P.D.
    Brief Bioinform 12:449-462(2011) [PubMed] [Europe PMC] [Abstract]
• production of siRNA involved in RNA interference Source: GO_CentralInferred from biological aspect of ancestorⁱ
  • "Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium."
    Gaudet P., Livstone M.S., Lewis S.E., Thomas P.D.
    Brief Bioinform 12:449-462(2011) [PubMed] [Europe PMC] [Abstract]
• regulation of fungal-type cell wall organization Source: SGDInferred from mutant phenotypeⁱ
  • "RNA-dependent regulation of the cell wall stress response."
    Catala M., Aksouh L., Abou Elela S.
    Nucleic Acids Res 40:7507-7517(2012) [PubMed] [Europe PMC] [Abstract]
• RNA processing Source: GO_CentralInferred from biological aspect of ancestorⁱ
  • "Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium."
    Gaudet P., Livstone M.S., Lewis S.E., Thomas P.D.
    Brief Bioinform 12:449-462(2011) [PubMed] [Europe PMC] [Abstract]
• rRNA processing Source: SGDInferred from mutant phenotypeⁱ
  • "Deletion of Rnt1p alters the proportion of open versus closed rRNA gene repeats in yeast."
    Catala M., Tremblay M., Samson E., Conconi A., Abou Elela S.
    Mol Cell Biol 28:619-629(2008) [PubMed] [Europe PMC] [Abstract]
• rRNA transcription Source: SGDInferred from mutant phenotypeⁱ
  • "Deletion of Rnt1p alters the proportion of open versus closed rRNA gene repeats in yeast."
    Catala M., Tremblay M., Samson E., Conconi A., Abou Elela S.
    Mol Cell Biol 28:619-629(2008) [PubMed] [Europe PMC] [Abstract]
• termination of RNA polymerase II transcription, exosome-dependent Source: SGDInferred from direct assayⁱ
  • "Yeast RNase III triggers polyadenylation-independent transcription termination."
    Ghazal G., Gagnon J., Jacques P.E., Landry J.R., Robert F., Elela S.A.
    Mol Cell 36:99-109(2009) [PubMed] [Europe PMC] [Abstract]
• U1 snRNA 3'-end processing Source: SGDInferred from mutant phenotypeⁱ
  • "Functions of the exosome in rRNA, snoRNA and snRNA synthesis."
    Allmang C., Kufel J., Chanfreau G., Mitchell P., Petfalski E., Tollervey D.
    EMBO J 18:5399-5410(1999) [PubMed] [Europe PMC] [Abstract]
• U4 snRNA 3'-end processing Source: SGDInferred from mutant phenotypeⁱ
  • "Functions of the exosome in rRNA, snoRNA and snRNA synthesis."
    Allmang C., Kufel J., Chanfreau G., Mitchell P., Petfalski E., Tollervey D.
    EMBO J 18:5399-5410(1999) [PubMed] [Europe PMC] [Abstract]
• U5 snRNA 3'-end processing Source: SGDInferred from direct assayⁱ
  • "Alternative 3'-end processing of U5 snRNA by RNase III."
    Chanfreau G., Elela S.A., Ares M. Jr., Guthrie C.
    Genes Dev 11:2741-2751(1997) [PubMed] [Europe PMC] [Abstract]

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsⁱ

Enzyme and pathway databases

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyⁱ

Organism-specific databases

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationⁱ

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingⁱ

Molecule processing

Proteomic databases

PTM databases

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactionⁱ

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction%5Fsection">Interaction</a>' section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="https://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated at every <a href="http://www.uniprot.org/help/synchronization">UniProt release</a>.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsⁱ

Protein-protein interaction databases

Miscellaneous databases

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structureⁱ

Secondary structure

3D structure databases

Miscellaneous databases

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsⁱ

Domains and Repeats

Phylogenomic databases

Family and domain databases

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequenceⁱ

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusⁱ: Complete.

        10         20         30         40         50
MGSKVAGKKK TQNDNKLDNE NGSQQRENIN TKTLLKGNLK ISNYKYLEVI 
        60         70         80         90        100
QLEHAVTKLV ESYNKIIELS PNLVAYNEAV NNQDRVPVQI LPSLSRYQLK 
       110        120        130        140        150
LAAELKTLHD LKKDAILTEI TDYENEFDTE QKQPILQEIS KADMEKLEKL 
       160        170        180        190        200
EQVKREKREK IDVNVYENLN EKEDEEEDEG EDSYDPTKAG DIVKATKWPP 
       210        220        230        240        250
KLPEIQDLAI RARVFIHKST IKDKVYLSGS EMINAHNERL EFLGDSILNS 
       260        270        280        290        300
VMTLIIYNKF PDYSEGQLST LRMNLVSNEQ IKQWSIMYNF HEKLKTNFDL 
       310        320        330        340        350
KDENSNFQNG KLKLYADVFE AYIGGLMEDD PRNNLPKIRK WLRKLAKPVI 
       360        370        380        390        400
EEATRNQVAL EKTDKLDMNA KRQLYSLIGY ASLRLHYVTV KKPTAVDPNS 
       410        420        430        440        450
IVECRVGDGT VLGTGVGRNI KIAGIRAAEN ALRDKKMLDF YAKQRAAIPR 
       460        470 
SESVLKDPSQ KNKKRKFSDT S                                

Sequence databases

Genome annotation databases

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsⁱ

• 100% Identity
• 90% Identity
• 50% Identity

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesⁱ

Sequence databases

3D structure databases

Protein-protein interaction databases

PTM databases

Proteomic databases

Genome annotation databases

Organism-specific databases

Phylogenomic databases

Enzyme and pathway databases

Miscellaneous databases

Family and domain databases

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationⁱ

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousⁱ

Keywords - Technical termⁱ

Documents

1. Yeast chromosome XIII
   Yeast (Saccharomyces cerevisiae) chromosome XIII: entries and gene names
2. PDB cross-references
   Index of Protein Data Bank (PDB) cross-references
3. Yeast
   Yeast (Saccharomyces cerevisiae): entries, gene names and cross-references to SGD