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UniProtKB - Q01499 (POLG_BVDVS)

Entry version 147 (11 Dec 2019)
Sequence version 1 (01 Jul 1993)
Previous versions | rss
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Protein

Genome polyprotein

Gene
N/A
Organism
Bovine viral diarrhea virus (strain SD-1) (BVDV) (Mucosal disease virus)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the 'correct annotation' for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the 'protein existence' evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Initial binding to target cell probably involves interaction of E(rns) with glycosaminoglycans. E1 and/or E2 are responsible of cell attachment with CD46 and subsequent fusion after internalization of the virion by endocytosis (By similarity).By similarity
P7 forms a leader sequence to properly orient NS2 in the membrane.By similarity
Uncleaved NS2-3 is required for production of infectious virus.By similarity
NS2 protease seems to play a vital role in viral RNA replication control and in the pathogenicity of the virus.PROSITE-ProRule annotation
NS3 displays three enzymatic activities: serine protease, NTPase and RNA helicase.By similarity
NS4A is a cofactor for the NS3 protease activity.By similarity
RNA-directed RNA polymerase NS5 replicates the viral (+) and (-) genome.PROSITE-ProRule annotation

Miscellaneous

BVDV is divided in two types: cytopathic and non-cytopathic. Both types of viruses can be found in animals suffering from mucosal disease, as a cytopathic BVDV can develop from a non-cytopathic virus within the infected animal by deletions, mutations or insertions. Both types express uncleaved NS2-3, but cytopathic strains also express NS3.

<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section describes the catalytic activity of an enzyme, i.e. a chemical reaction that the enzyme catalyzes.<p><a href='/help/catalytic_activity' target='_top'>More...</a></p>Catalytic activityi

  • Leu is conserved at position P1 for all four cleavage sites. Alanine is found at position P1' of the NS4A-NS4B cleavage site, whereas serine is found at position P1' of the NS3-NS4A, NS4B-NS5A and NS5A-NS5B cleavage sites. EC:3.4.21.113

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function%5Fsection">Function</a> section is used for enzymes and indicates the residues directly involved in catalysis.<p><a href='/help/act_site' target='_top'>More...</a></p>Active sitei49For N-terminal protease activityPROSITE-ProRule annotation1
Active sitei69For N-terminal protease activityPROSITE-ProRule annotation1
Active sitei1447For cysteine protease NS2 activityPROSITE-ProRule annotation1
Active sitei1461For cysteine protease NS2 activityPROSITE-ProRule annotation1
Active sitei1512For cysteine protease NS2 activityPROSITE-ProRule annotation1
Active sitei1658Charge relay system; for serine protease NS3 activityPROSITE-ProRule annotation1
Active sitei1695Charge relay system; for serine protease NS3 activityPROSITE-ProRule annotation1
Active sitei1752Charge relay system; for serine protease NS3 activityPROSITE-ProRule annotation1

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

Complete GO annotation on QuickGO ...

GO - Biological processi

Complete GO annotation on QuickGO ...

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionHelicase, Hydrolase, Ion channel, Nucleotidyltransferase, Protease, RNA-directed RNA polymerase, Serine protease, Thiol protease, Transferase, Viral ion channel
Biological processActivation of host autophagy by virus, Clathrin-mediated endocytosis of virus by host, Fusion of virus membrane with host endosomal membrane, Fusion of virus membrane with host membrane, Host-virus interaction, Inhibition of host innate immune response by virus, Inhibition of host IRF3 by virus, Inhibition of host RLR pathway by virus, Ion transport, Transport, Viral attachment to host cell, Viral immunoevasion, Viral penetration into host cytoplasm, Viral RNA replication, Virus endocytosis by host, Virus entry into host cell
LigandATP-binding, Nucleotide-binding

Enzyme and pathway databases

BRENDA Comprehensive Enzyme Information System

More...BRENDAi		3.4.21.113 925

Protein family/group databases

MEROPS protease database

More...MEROPSi		S31.001

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Genome polyprotein
Cleaved into the following 13 chains:
N-terminal protease (EC:3.4.22.-)
Short name:
N-pro
Alternative name(s):
Autoprotease p20
Capsid protein C
E(rns) glycoprotein
Alternative name(s):
gp44/48
Envelope glycoprotein E1
Alternative name(s):
gp33
Envelope glycoprotein E2
Alternative name(s):
gp55
p7
Non-structural protein 2-3
Cysteine protease NS2 (EC:3.4.22.-)
Alternative name(s):
Non-structural protein 2
Serine protease NS3 (EC:3.4.21.113, EC:3.6.1.15, EC:3.6.4.13)
Alternative name(s):
Non-structural protein 3
Non-structural protein 4A
Short name:
NS4A
Non-structural protein 4B
Short name:
NS4B
Non-structural protein 5A
Short name:
NS5A
RNA-directed RNA polymerase (EC:2.7.7.48)
Alternative name(s):
NS5B
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiBovine viral diarrhea virus (strain SD-1) (BVDV) (Mucosal disease virus)
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the 'taxonomic identifier' or 'taxid'.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri31656 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiViruses › Riboviria › Flaviviridae › Pestivirus ›
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section only exists in viral entries and indicates the host(s) either as a specific organism or taxonomic group of organisms that are susceptible to be infected by a virus.<p><a href='/help/virus_host' target='_top'>More...</a></p>Virus hostiBos taurus (Bovine) [TaxID: 9913]
<p>This subsection of the <a href="http://www.uniprot.org/help/names%5Fand%5Ftaxonomy%5Fsection">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000007619 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes%5Fmanual">proteome</a> can consist of several components.<br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Genome

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Topology

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/subcellular%5Flocation%5Fsection">'Subcellular location'</a> section describes the extent of a membrane-spanning region of the protein. It denotes the presence of both alpha-helical transmembrane regions and the membrane spanning regions of beta-barrel transmembrane proteins.<p><a href='/help/transmem' target='_top'>More...</a></p>Transmembranei1144 – 1164HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei1189 – 1209HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei1217 – 1237HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei1247 – 1267HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei1281 – 1301HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei1360 – 1380HelicalPROSITE-ProRule annotationAdd BLAST21
Transmembranei1568 – 1588HelicalPROSITE-ProRule annotationAdd BLAST21

GO - Cellular componenti

Complete GO annotation on QuickGO ...

Keywords - Cellular componenti

Host membrane, Membrane, Virion

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the 'PTM / Processing' section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00000380371 – 168N-terminal proteaseBy similarityAdd BLAST168
ChainiPRO_0000038038169 – 270Capsid protein CBy similarityAdd BLAST102
ChainiPRO_0000038039271 – 497E(rns) glycoproteinBy similarityAdd BLAST227
ChainiPRO_0000038040498 – 659Envelope glycoprotein E1By similarityAdd BLAST162
ChainiPRO_0000038041660 – 1066Envelope glycoprotein E2By similarityAdd BLAST407
ChainiPRO_00000380421067 – 1136p7By similarityAdd BLAST70
ChainiPRO_00000380431137 – 2272Non-structural protein 2-3By similarityAdd BLAST1136
ChainiPRO_00000380441137 – 1589Cysteine protease NS2PROSITE-ProRule annotationAdd BLAST453
ChainiPRO_00000380451590 – 2272Serine protease NS3By similarityAdd BLAST683
ChainiPRO_00000380462273 – 2336Non-structural protein 4ABy similarityAdd BLAST64
ChainiPRO_00000380472337 – 2683Non-structural protein 4BBy similarityAdd BLAST347
ChainiPRO_00000380482684 – 3179Non-structural protein 5ABy similarityAdd BLAST496
ChainiPRO_00000380493180 – 3898RNA-directed RNA polymeraseBy similarityAdd BLAST719

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM / Processing</a> section specifies the position and type of each covalently attached glycan group (mono-, di-, or polysaccharide).<p><a href='/help/carbohyd' target='_top'>More...</a></p>Glycosylationi272N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi281N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi296N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi335N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi365N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi370N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi413N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi487N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi597N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi809N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi878N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi922N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi990N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi1357N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi1419N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi1451N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi1713N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi2134N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi2217N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi2494N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi2682N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi2751N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi2891N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi2988N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi3688N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi3777N-linked (GlcNAc...) asparagine; by hostSequence analysis1
Glycosylationi3793N-linked (GlcNAc...) asparagine; by hostSequence analysis1

<p>This subsection of the <a href="http://www.uniprot.org/help/ptm%5Fprocessing%5Fsection">PTM/processing</a> section describes post-translational modifications (PTMs). This subsection <strong>complements</strong> the information provided at the sequence level or describes modifications for which <strong>position-specific data is not yet available</strong>.<p><a href='/help/post-translational_modification' target='_top'>More...</a></p>Post-translational modificationi

The E(rns) glycoprotein is heavily glycosylated.By similarity
The viral RNA of pestiviruses is expressed as a single polyprotein which undergoes post-translational proteolytic processing resulting in the production of at least eleven individual proteins. The N-terminal protease cleaves itself from the nascent polyprotein autocatalytically and thereby generates the N-terminus of the adjacent viral capsid protein C (By similarity).By similarity
Cleavage between E2 and p7 is partial.By similarity

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections ('Function', 'PTM / Processing', 'Pathology and Biotech') according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei168 – 169Cleavage; by autolysisPROSITE-ProRule annotation2
Sitei270 – 271Cleavage; by host signal peptidaseBy similarity2
Sitei497 – 498CleavageBy similarity2
Sitei659 – 660Cleavage; by host signal peptidaseBy similarity2
Sitei1066 – 1067Cleavage; by host signal peptidase; partialBy similarity2
Sitei1136 – 1137Cleavage; by host signal peptidaseBy similarity2
Sitei1589 – 1590Cleavage; partial; cysteine protease NS2PROSITE-ProRule annotation2
Sitei2272 – 2273Cleavage; by serine protease NS3By similarity2
Sitei2336 – 2337Cleavage; by serine protease NS3By similarity2
Sitei2683 – 2684Cleavage; by serine protease NS3By similarity2
Sitei3179 – 3180Cleavage; by serine protease NS3By similarity2

Keywords - PTMi

Disulfide bond, Glycoprotein

Proteomic databases

PRoteomics IDEntifications database

More...PRIDEi		Q01499

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction%5Fsection">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function%5Fsection">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

The E(rns) glycoprotein is found as a homodimer; disulfide-linked. The E1 and E2 envelope glycoproteins form disulfide-linked homodimers as well as heterodimers.

By similarity

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

13898
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...SMRi		Q01499

Database of comparative protein structure models

More...ModBasei		Search...

Protein Data Bank in Europe - Knowledge Base

More...PDBe-KBi		Search...

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Domains and Repeats

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/family%5Fand%5Fdomains%5Fsection">Family and Domains</a> section describes the position and type of a domain, which is defined as a specific combination of secondary structures organized into a characteristic three-dimensional structure or fold.<p><a href='/help/domain' target='_top'>More...</a></p>Domaini1 – 168Peptidase C53PROSITE-ProRule annotationAdd BLAST168
Domaini1441 – 1589Peptidase C74PROSITE-ProRule annotationAdd BLAST149
Domaini1590 – 1763Peptidase S31PROSITE-ProRule annotationAdd BLAST174
Domaini1802 – 1960Helicase ATP-bindingPROSITE-ProRule annotationAdd BLAST159
Domaini1978 – 2143Helicase C-terminalPROSITE-ProRule annotationAdd BLAST166
Domaini3518 – 3641RdRp catalyticPROSITE-ProRule annotationAdd BLAST124

<p>This subsection of the 'Family and domains' section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the pestivirus polyprotein family.Curated

Keywords - Domaini

Transmembrane, Transmembrane helix

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...Gene3Di		2.30.140.40, 1 hit
2.60.320.20, 1 hit
2.60.40.3000, 1 hit
3.30.1360.280, 1 hit
3.90.730.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...InterProi		View protein in InterPro
IPR021824 Capsid-C_pestivirus
IPR011492 DEAD_Flavivir
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR022120 NS2
IPR030399 NS2_C74
IPR027417 P-loop_NTPase
IPR008751 Peptidase_C53
IPR042542 Peptidase_C53_interaction
IPR032521 Pestivirus_E2
IPR042309 Pestivirus_E2_A
IPR042310 Pestivirus_E2_B
IPR042311 Pestivirus_E2_D
IPR000280 Pestivirus_NS3_S31
IPR007094 RNA-dir_pol_PSvirus
IPR002166 RNA_pol_HCV
IPR036430 RNase_T2-like_sf
IPR033130 RNase_T2_His_AS_2

Pfam protein domain database

More...Pfami		View protein in Pfam
PF11889 DUF3409, 1 hit
PF07652 Flavi_DEAD, 1 hit
PF00271 Helicase_C, 1 hit
PF05550 Peptidase_C53, 1 hit
PF12387 Peptidase_C74, 1 hit
PF05578 Peptidase_S31, 1 hit
PF16329 Pestivirus_E2, 1 hit
PF00998 RdRP_3, 1 hit

Protein Motif fingerprint database; a protein domain database

More...PRINTSi		PR00729 CDVENDOPTASE

Simple Modular Architecture Research Tool; a protein domain database

More...SMARTi		View protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit

Superfamily database of structural and functional annotation

More...SUPFAMi		SSF52540 SSF52540, 1 hit
SSF55895 SSF55895, 1 hit

PROSITE; a protein domain and family database

More...PROSITEi		View protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51692 PESTIVIRUS_NS2_PRO, 1 hit
PS51535 PESTIVIRUS_NS3PRO, 1 hit
PS51876 PV_NPRO, 1 hit
PS50507 RDRP_SSRNA_POS, 1 hit
PS00531 RNASE_T2_2, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence%5Flength">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequencei

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences%5Fsection">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> displayed by default in the entry is in its mature form or if it represents the precursor.<p><a href='/help/sequence_processing' target='_top'>More...</a></p>Sequence processingi: The displayed sequence is further processed into a mature form.

Q01499-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MELITNELLY KTYKQKPVGV EEPVYDQAGN PLFGERGAIH PQSTLKLPHK 
        60         70         80         90        100
RGERNVPTSL ASLPKRGDCR SGNSKGPVSG IYLKPGPLFY QDYKGPVYHR 
       110        120        130        140        150
APLELFEEGS MCETTKRIGR VTGSDGKLYH IYICIDGCIT VKSATRSHQR 
       160        170        180        190        200
VLRWVHNRLD CPLWVTSCSD TKEEGATKKK QQKPDRLEKG RMKIVPKESE 
       210        220        230        240        250
KDSKTKPPDA TIVVDGVKYQ VKKKGKVKSK NTQDGLYHNK NKPPESRKKL 
       260        270        280        290        300
EKALLAWAIL AVVLIEVTMG ENITQWNLQD NGTEGIQRAM FQRGVNRSLH 
       310        320        330        340        350
GIWPEKICTG VPSHLATDVE LKTIHGMMDA SEKTNYTCCR LQRHEWNKHG 
       360        370        380        390        400
WCNWYNIEPW ILIMNRTQAN LTEGQPPREC AVTCRYDRDS DLNVVTQARD 
       410        420        430        440        450
SPTPLTGCKK GKNFSFAGVL TRGPCNFEIA ASDVLFKEHE CTGVFQDTAH 
       460        470        480        490        500
YLVDGVTNSL ESARQGTAKL TTWLGKQLGI LGKKLENKSK TWFGAYAASP 
       510        520        530        540        550
YCDVDRKIGY IWFTKNCTPA CLPKNTKIIG PGKFDTNAED GKILHEMGGH 
       560        570        580        590        600
LSEVLLLSLV VLSDFAPETA SAMYLILHFS IPQSHVDITD CDKTQLNLTI 
       610        620        630        640        650
ELTTADVIPG SVWNLGKYVC IRPDWWPYET AAVLAFEEVG QVVKIVLRAL 
       660        670        680        690        700
RDLTRIWNAA TTTAFLVCLI KMVRGQVVQG ILWLLLITGV QGHLDCKPEY 
       710        720        730        740        750
SYAIAKNDRV GPLGAEGLTT VWKDYSHEMK LEDTMVIAWC KGGKFTYLSR 
       760        770        780        790        800
CTRETRYLAI LHSRALPTSV VFKKLFEGQK QEDTVEMDDD FEFGLCPCDA 
       810        820        830        840        850
KPIVRGKFNT TLLNGPAFQM VCPIGWTGTV SCMLANRDTL DTAVVRTYRR 
       860        870        880        890        900
SVPFPYRQGC ITQKTLGEDL YDCALGGNWT CVTGDQSRYT GGLIESCKWC 
       910        920        930        940        950
GYKFQKSEGL PHYPIGKCRL NNETGYRLVD DTSCDREGVA IVPHGLVKCK 
       960        970        980        990       1000
IGDTTVQVIA TDTKLGPMPC KPHEIISSEG PIEKTACTFN YTRTLKNKYF 
      1010       1020       1030       1040       1050
EPRDSYFQQY MLKGDYQYWF DLEVTDHHRD YFAESILVVV VALLGGRYVL 
      1060       1070       1080       1090       1100
WLLVTYMVLS EQKASGAQYG AGEVVMMGNL LTHDNVEVVT YFFLLYLLLR 
      1110       1120       1130       1140       1150
EESVKKWVLL LYHILVAHPL KSVIVILLMI GDVVKADPGG QGYLGQIDVC 
      1160       1170       1180       1190       1200
FTMVVIIIIG LIIARRDPTI VPLITIVASL RVTGLTYSPG VDAAMAVITI 
      1210       1220       1230       1240       1250
TLLMVSYVTD YFRYKRWLQC ILSLVSGVFL IRCLIHLGRI ETPEVTIPNW 
      1260       1270       1280       1290       1300
RPLTLILFYL ISTTVVTMWK IDLAGLLLQG VPILLLITTL WADFLTLILI 
      1310       1320       1330       1340       1350
LPTYELVKLY YLKTIKTDIE KSWLGGLDYK RVDSIYDVDE SGEGVYLFPS 
      1360       1370       1380       1390       1400
RQKAQKNFSM LLPLVRATLI SCVSSKWQLI YMAYLSVDFM YYMHRKVIEE 
      1410       1420       1430       1440       1450
ISGGTNMISR IVAALIELNW SMEEEESKGL KKFYLLSGRL RNLIIKHKVR 
      1460       1470       1480       1490       1500
NETVAGWYGE EEVYGMPKIM TIIKASTLNK NKHCIICTVC EGRKWKGGTC 
      1510       1520       1530       1540       1550
PKCGRHGKPI TCGMSLADFE ERHYKRIFIR EGNFEGPFRQ EYNGFIQYTA 
      1560       1570       1580       1590       1600
RGQLFLRNLP ILATKVKMLM VGNLGEEVGD LEHLGWILRG PAVCKKITEH 
      1610       1620       1630       1640       1650
ERCHINILDK LTAFFGIMPR GTTPRAPVRF PTSLLKVRRG LETGWAYTHQ 
      1660       1670       1680       1690       1700
GGISSVDHVT AGKDLLVCDS MGRTRVVCQS NNKLTDETEY GVKTDSGCPD 
      1710       1720       1730       1740       1750
GARCYVLNPE AVNISGSKGA VVHLQKTGGE FTCVTASGTP AFFDLKNLKG 
      1760       1770       1780       1790       1800
WSGLPIFEAS SGRVVGRVKV GKNEESKPTK IMSGIQTVSK NTADLTEMVK 
      1810       1820       1830       1840       1850
KITSMNRGDF KQITLATGAG KTTELPKAVI EEIGRHKRVL VLIPLRAAAE 
      1860       1870       1880       1890       1900
SVYQYMRLKH PSISFNLRIG DMKEGDMATG ITYASYGYFC QMPQPKLRAA 
      1910       1920       1930       1940       1950
MVEYSYIFLD EYHCATPEQL AIIGKIHRFS ESIRVVAMTA TPAGSVTTTG 
      1960       1970       1980       1990       2000
QKHPIEEFIA PEVMEGEDLG SQFLDIAGLK IPVDEMKGNM LVFVPTRNMA 
      2010       2020       2030       2040       2050
VEVAKKLKAK GYNSGYYYSG EDPANLRVVT SQSPYVIVAT NAIESGVTLP 
      2060       2070       2080       2090       2100
DLDTVVDTGL KCEKRVRVSS KIPFIVTGLK RMAVTVGEQA QRRGRVGRVK 
      2110       2120       2130       2140       2150
PGRYYRSQET ATGSKDYHYD LLQAQRYGIE DGINVTKSFR EMNYDWSLYE 
      2160       2170       2180       2190       2200
EDSLLITQLE ILNNLLISED LPAAVKNIMA RTDHPEPIQL AYNSYEVQVP 
      2210       2220       2230       2240       2250
VLFPKIRNGE VTDTYENYSF LNARKLGEDV PVYIYATEDE DLAVDLLGLD 
      2260       2270       2280       2290       2300
WPDPGNQQVV ETGKALKQVA GLSSAENALL VALFGYVGYQ ALSKRHVPMI 
      2310       2320       2330       2340       2350
TDIYTIEDQR LEDTTHLQYA PNAIKTEGTE TELKELASGD VEKIMGAISD 
      2360       2370       2380       2390       2400
YAAGGLDFVK SQAEKIKTAP LFKENVEAAR GYVQKLIDSL IEDKDVIIRY 
      2410       2420       2430       2440       2450
GLWGTHTALY KSIAARLGHE TAFATLVLKW LAFGGETVSD HIRQAAVDLV 
      2460       2470       2480       2490       2500
VYYVMNKPSF PGDTETQQEG RRFVASLFIS ALATYTYKTW NYNNLSKVVE 
      2510       2520       2530       2540       2550
PALAYLPYAT SALKMFTPTR LESVVILSTT IYKTYLSIRK GKSDGLLGTG 
      2560       2570       2580       2590       2600
ISAAMEILSQ NPVSVGISVM LGVGAIAAHN AIESSEQKRT LLMKVFVKNF 
      2610       2620       2630       2640       2650
LDQAATDELV KENPEKIIMA LFEAVQTIGN PLRLIYHLYG VYYKGWEAKE 
      2660       2670       2680       2690       2700
LSERTAGRNL FTLIMFEAFE LLGMDSEGKI RNLSGNYILD LIHGLHKQIN 
      2710       2720       2730       2740       2750
RGLKKIVLGW APAPFSCDWT PSDERIRLPT DSYLRVETKC PCGYEMKALK 
      2760       2770       2780       2790       2800
NVSGKLTKVE ESGPFLCRNR PGRGPVNYRV TKYYDDNLRE IRPVAKLEGQ 
      2810       2820       2830       2840       2850
VEHYYKGVTA RIDYSKGKTL LATDKWEVEH GTLTRLTKRY TGVGFRGAYL 
      2860       2870       2880       2890       2900
GDEPNHRDLV ERDCATITKN TVQFLKMKKG CAFTYDLTIS NLTRLIELVH 
      2910       2920       2930       2940       2950
RNNLEEKEIP TATVTTWLAY TFVNEDVGTI KPVLGERVIP DPVVDINLQP 
      2960       2970       2980       2990       3000
EVQVDTSEVG ITIIGKEAVM TTGVTPVMEK VEPDTDNNQS SVKIGLDEGN 
      3010       3020       3030       3040       3050
YPGPGVQTHT LVEEIHNKDA RPFIMVLGSK SSMSNRAKTA RNINLYTGND 
      3060       3070       3080       3090       3100
PREIRDLMAE GRILVVALRD IDPDLSELVD FKGTFLDREA LEALSLGQPK 
      3110       3120       3130       3140       3150
PKQVTKAAIR DLLKEERQVE IPDWFTSDDP VFLDIAMKKD KYHLIGDVVE 
      3160       3170       3180       3190       3200
VKDQAKALGA TDQTRIVKEV GSRTYTMKLS SWFLQASSKQ MSLTPLFEEL 
      3210       3220       3230       3240       3250
LLRCPPATKS NKGHMASAYQ LAQGNWEPLG CGVHLGTVPA RRVKMHPYEA 
      3260       3270       3280       3290       3300
YLKLKDLVEE EEKKPRIRDT VIREHNKWIL KKIKFQGNLN TKKMLNPGKL 
      3310       3320       3330       3340       3350
SEQLDREGHK RNIYNNQIST VMSSAGIRLE KLPIVRAQTD TKSFHEAIRD 
      3360       3370       3380       3390       3400
KIDKNENRQN PELHNKLLEI FHTIADPSLK HTYGEVTWEQ LEAGINRKGA 
      3410       3420       3430       3440       3450
AGFLEKKNIG EVLDSEKHLV EQLVRDLKAG RKIRYYETAI PKNEKRDVSD 
      3460       3470       3480       3490       3500
DWQAGDLVDE KKPRVIQYPE AKTRLAITKV MYNWVKQQPV VIPGYEGKTP 
      3510       3520       3530       3540       3550
LFNIFNKVRK EWDLFNEPVA VSFDTKAWDT QVTSRDLHLI GEIQKYYYRK 
      3560       3570       3580       3590       3600
EWHKFIDTIT DHMVEVPVIT ADGEVYIRNG QRGSGQPDTS AGNSMLNVLT 
      3610       3620       3630       3640       3650
MIYAFCESTG VPYKSFNRVA KIHVCGDDGF LITEKGLGLK FSNKGMQILH 
      3660       3670       3680       3690       3700
EAGKPQKLTE GEKMKVAYKF EDIEFCSHTP VPVRWSDNTS SYMAGRDTAV 
      3710       3720       3730       3740       3750
ILSKMATRLD SSGERGTTAY EKAVAFSFLL MYSWNPLVRR ICLLVLSQRP 
      3760       3770       3780       3790       3800
ETAPSTQTTY YYKGDPIGAY KDVIGRNLSE LKRTGFEKLA NLNLSLSTLG 
      3810       3820       3830       3840       3850
IWTKHTSKRI IQDCVAIGKE EGNWLVNADR LISSKTGHLY IPDKGFTLQG 
      3860       3870       3880       3890 
KHYEQLQLGA ETNPVMGVGT ERYKLGPIVN LLLRRLKVLL MAAVGASS
Length:3,898
Mass (Da):437,808
Last modified:July 1, 1993 - v1
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i31ACEE140D407ED3
GO

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...EMBLi

GenBank nucleotide sequence database

More...GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...DDBJi
Links Updated
M96751 Genomic RNA Translation: AAA42860.1

Protein sequence database of the Protein Information Resource

More...PIRi		A44217

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M96751 Genomic RNA Translation: AAA42860.1
PIRiA44217

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...PDBei

Protein Data Bank RCSB

More...RCSB PDBi

Protein Data Bank Japan

More...PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2YQ2X-ray2.58A/B696-1026[»]
2YQ3X-ray3.29A/B696-1026[»]
SMRiQ01499
ModBaseiSearch...
PDBe-KBiSearch...

Protein family/group databases

MEROPSiS31.001

Proteomic databases

PRIDEiQ01499

Enzyme and pathway databases

BRENDAi3.4.21.113 925

Family and domain databases

Gene3Di2.30.140.40, 1 hit
2.60.320.20, 1 hit
2.60.40.3000, 1 hit
3.30.1360.280, 1 hit
3.90.730.10, 1 hit
InterProiView protein in InterPro
IPR021824 Capsid-C_pestivirus
IPR011492 DEAD_Flavivir
IPR014001 Helicase_ATP-bd
IPR001650 Helicase_C
IPR022120 NS2
IPR030399 NS2_C74
IPR027417 P-loop_NTPase
IPR008751 Peptidase_C53
IPR042542 Peptidase_C53_interaction
IPR032521 Pestivirus_E2
IPR042309 Pestivirus_E2_A
IPR042310 Pestivirus_E2_B
IPR042311 Pestivirus_E2_D
IPR000280 Pestivirus_NS3_S31
IPR007094 RNA-dir_pol_PSvirus
IPR002166 RNA_pol_HCV
IPR036430 RNase_T2-like_sf
IPR033130 RNase_T2_His_AS_2
PfamiView protein in Pfam
PF11889 DUF3409, 1 hit
PF07652 Flavi_DEAD, 1 hit
PF00271 Helicase_C, 1 hit
PF05550 Peptidase_C53, 1 hit
PF12387 Peptidase_C74, 1 hit
PF05578 Peptidase_S31, 1 hit
PF16329 Pestivirus_E2, 1 hit
PF00998 RdRP_3, 1 hit
PRINTSiPR00729 CDVENDOPTASE
SMARTiView protein in SMART
SM00487 DEXDc, 1 hit
SM00490 HELICc, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
SSF55895 SSF55895, 1 hit
PROSITEiView protein in PROSITE
PS51192 HELICASE_ATP_BIND_1, 1 hit
PS51194 HELICASE_CTER, 1 hit
PS51692 PESTIVIRUS_NS2_PRO, 1 hit
PS51535 PESTIVIRUS_NS3PRO, 1 hit
PS51876 PV_NPRO, 1 hit
PS50507 RDRP_SSRNA_POS, 1 hit
PS00531 RNASE_T2_2, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

More...ProtoNeti		Search...

MobiDB: a database of protein disorder and mobility annotations

More...MobiDBi		Search...

<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the 'Entry information' section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiPOLG_BVDVS
<p>This subsection of the 'Entry information' section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called 'Primary (citable) accession number'.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q01499
<p>This subsection of the 'Entry information' section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification ('Last modified'). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical%5Fand%5Fisoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: July 1, 1993
Last sequence update: July 1, 1993
Last modified: December 11, 2019
This is version 147 of the entry and version 1 of the sequence. See complete history.
<p>This subsection of the 'Entry information' section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programViral Protein Annotation Program

<p>This section contains any relevant information that doesn't fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
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