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Protein

Ras-related protein YPT3

Gene

YPT3

Organism
Nicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco)
Status
Reviewed-Annotation score: -Experimental evidence at transcript leveli

Functioni

Protein transport. Probably involved in vesicular traffic (By similarity).By similarity

Caution

This sequence does not have the CYS-CYS motif at the C-terminal as do homologous sequences from yeast species. It may be either geranylgeranylated at an alternative motif or it may be subject to farnesylation on CYS-215.Curated

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Nucleotide bindingi20 – 27GTPBy similarity8
Nucleotide bindingi68 – 72GTPBy similarity5
Nucleotide bindingi126 – 129GTPBy similarity4

GO - Molecular functioni

GO - Biological processi

Keywordsi

Biological processProtein transport, Transport
LigandGTP-binding, Nucleotide-binding

Names & Taxonomyi

Protein namesi
Recommended name:
Ras-related protein YPT3
Gene namesi
Name:YPT3
OrganismiNicotiana plumbaginifolia (Leadwort-leaved tobacco) (Tex-Mex tobacco)
Taxonomic identifieri4092 [NCBI]
Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliophytaeudicotyledonsGunneridaePentapetalaeasteridslamiidsSolanalesSolanaceaeNicotianoideaeNicotianeaeNicotiana

Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte; Source: COMPARTMENTS

Keywords - Cellular componenti

Cell membrane, Membrane

PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
ChainiPRO_00001211741 – 218Ras-related protein YPT3Add BLAST218

Amino acid modifications

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Lipidationi215S-geranylgeranyl cysteineBy similarity1
Lipidationi216S-geranylgeranyl cysteineBy similarity1

Keywords - PTMi

Lipoprotein, Prenylation

Proteomic databases

PRIDEiQ01111

Expressioni

Tissue specificityi

Its expression is weak in leaves, higher in stems and roots, but highest in petals, stigma and stamens.

Structurei

3D structure databases

ProteinModelPortaliQ01111
SMRiQ01111
ModBaseiSearch...
MobiDBiSearch...

Family & Domainsi

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
Motifi42 – 50Effector regionSequence analysis9

Sequence similaritiesi

Belongs to the small GTPase superfamily. Rab family.Curated

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
PfamiView protein in Pfam
PF00071 Ras, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS51419 RAB, 1 hit

Sequencei

Sequence statusi: Complete.

Q01111-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MAGYRADDEY DYLFKLVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF
60 70 80 90 100
ATKSLNIDNK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
110 120 130 140 150
YENVTRWLKE LRDHTDPNIV VMLIGNKSDL RHLVAVSTDE AKGLAEREGL
160 170 180 190 200
YFMETSALEA TNVENAFTEA LTQIYRIVSK KAVEAGDEGA TSSAPPKGET
210
INIKDEGSSW KKFGCCSS
Length:218
Mass (Da):24,183
Last modified:April 1, 1993 - v1
Checksum:i5A1B5BEAC5BF2443
GO

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X63874 mRNA Translation: CAA45351.1
PIRiS23523

Similar proteinsi

Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
X63874 mRNA Translation: CAA45351.1
PIRiS23523

3D structure databases

ProteinModelPortaliQ01111
SMRiQ01111
ModBaseiSearch...
MobiDBiSearch...

Proteomic databases

PRIDEiQ01111

Protocols and materials databases

Structural Biology KnowledgebaseSearch...

Family and domain databases

InterProiView protein in InterPro
IPR027417 P-loop_NTPase
IPR005225 Small_GTP-bd_dom
IPR001806 Small_GTPase
PfamiView protein in Pfam
PF00071 Ras, 1 hit
SUPFAMiSSF52540 SSF52540, 1 hit
TIGRFAMsiTIGR00231 small_GTP, 1 hit
PROSITEiView protein in PROSITE
PS51419 RAB, 1 hit
ProtoNetiSearch...

Entry informationi

Entry nameiYPT3_NICPL
AccessioniPrimary (citable) accession number: Q01111
Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: April 1, 1993
Last modified: May 10, 2017
This is version 95 of the entry and version 1 of the sequence. See complete history.
Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

Miscellaneousi

Documents

  1. SIMILARITY comments
    Index of protein domains and families
UniProt is an ELIXIR core data resource
Main funding by: National Institutes of Health

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