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Entry version 144 (16 Oct 2019)
Sequence version 2 (22 Sep 2009)
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Protein

Protein LEAFY

Gene

LFY

Organism
Arabidopsis thaliana (Mouse-ear cress)
Status
Reviewed-Annotation score:

Annotation score:5 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>
-Experimental evidence at protein leveli <p>This indicates the type of evidence that supports the existence of the protein. Note that the ‘protein existence’ evidence does not give information on the accuracy or correctness of the sequence(s) displayed.<p><a href='/help/protein_existence' target='_top'>More...</a></p>

<p>This section provides any useful information about the protein, mostly biological knowledge.<p><a href='/help/function_section' target='_top'>More...</a></p>Functioni

Probable transcription factor that promotes early floral meristem identity in synergy with APETALA1. Is required subsequently for the transition of an inflorescence meristem into a floral meristem, by an immediate upstream regulation of the ABC classes of floral homeotic genes. Activates directly APETALA1, CAULIFLOWER and AGAMOUS, and indirectly APETALA3 and PISTILLATA with the cooperation of UFO.3 Publications

Miscellaneous

Mutations in the LEAFY gene result in the complete transformation of the first few flowers into leaves with associated shoots.

Regions

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/help/function_section">Function</a> section specifies the position and type of each DNA-binding domain present within the protein.<p><a href='/help/dna_bind' target='_top'>More...</a></p>DNA bindingi233 – 237Combined sources1 Publication5
DNA bindingi302 – 309Combined sources1 Publication8
DNA bindingi373 – 376Combined sources1 Publication4

<p>The <a href="http://www.geneontology.org/">Gene Ontology (GO)</a> project provides a set of hierarchical controlled vocabulary split into 3 categories:<p><a href='/help/gene_ontology' target='_top'>More...</a></p>GO - Molecular functioni

GO - Biological processi

<p>UniProtKB Keywords constitute a <a href="http://www.uniprot.org/keywords">controlled vocabulary</a> with a hierarchical structure. Keywords summarise the content of a UniProtKB entry and facilitate the search for proteins of interest.<p><a href='/help/keywords' target='_top'>More...</a></p>Keywordsi

Molecular functionActivator, Developmental protein, DNA-binding
Biological processDifferentiation, Flowering, Transcription, Transcription regulation

<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Names & Taxonomyi

<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides an exhaustive list of all names of the protein, from commonly used to obsolete, to allow unambiguous identification of a protein.<p><a href='/help/protein_names' target='_top'>More...</a></p>Protein namesi
Recommended name:
Protein LEAFY
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section indicates the name(s) of the gene(s) that code for the protein sequence(s) described in the entry. Four distinct tokens exist: ‘Name’, ‘Synonyms’, ‘Ordered locus names’ and ‘ORF names’.<p><a href='/help/gene_name' target='_top'>More...</a></p>Gene namesi
Name:LFY
Ordered Locus Names:At5g61850
ORF Names:MAC9.18
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section provides information on the name(s) of the organism that is the source of the protein sequence.<p><a href='/help/organism-name' target='_top'>More...</a></p>OrganismiArabidopsis thaliana (Mouse-ear cress)
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section shows the unique identifier assigned by the NCBI to the source organism of the protein. This is known as the ‘taxonomic identifier’ or ‘taxid’.<p><a href='/help/taxonomic_identifier' target='_top'>More...</a></p>Taxonomic identifieri3702 [NCBI]
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section contains the taxonomic hierarchical classification lineage of the source organism. It lists the nodes as they appear top-down in the taxonomic tree, with the more general grouping listed first.<p><a href='/help/taxonomic_lineage' target='_top'>More...</a></p>Taxonomic lineageiEukaryotaViridiplantaeStreptophytaEmbryophytaTracheophytaSpermatophytaMagnoliopsidaeudicotyledonsGunneridaePentapetalaerosidsmalvidsBrassicalesBrassicaceaeCamelineaeArabidopsis
<p>This subsection of the <a href="http://www.uniprot.org/help/names_and_taxonomy_section">Names and taxonomy</a> section is present for entries that are part of a <a href="http://www.uniprot.org/proteomes">proteome</a>, i.e. of a set of proteins thought to be expressed by organisms whose genomes have been completely sequenced.<p><a href='/help/proteomes_manual' target='_top'>More...</a></p>Proteomesi
  • UP000006548 <p>A UniProt <a href="http://www.uniprot.org/manual/proteomes_manual">proteome</a> can consist of several components. <br></br>The component name refers to the genomic component encoding a set of proteins.<p><a href='/help/proteome_component' target='_top'>More...</a></p> Componenti: Chromosome 5

Organism-specific databases

Arabidopsis Information Portal

More...
Araporti
AT5G61850

The Arabidopsis Information Resource

More...
TAIRi
locus:2159208 AT5G61850

<p>This section provides information on the location and the topology of the mature protein in the cell.<p><a href='/help/subcellular_location_section' target='_top'>More...</a></p>Subcellular locationi

Extracellular region or secreted Cytosol Plasma membrane Cell wall Cytoskeleton Vacuole Chloroplast Endosome Peroxisome ER Golgi apparatus Nucleus Mitochondrion Manual annotation Automatic computational assertion Graphics by Christian Stolte & Seán O’Donoghue; Source: COMPARTMENTS

Keywords - Cellular componenti

Nucleus

<p>This section provides information on the disease(s) and phenotype(s) associated with a protein.<p><a href='/help/pathology_and_biotech_section' target='_top'>More...</a></p>Pathology & Biotechi

Mutagenesis

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the <a href="http://www.uniprot.org/manual/pathology_and_biotech_section">'Pathology and Biotech'</a> section describes the effect of the experimental mutation of one or more amino acid(s) on the biological properties of the protein.<p><a href='/help/mutagen' target='_top'>More...</a></p>Mutagenesisi233R → A: Impaired DNA-binding. 1 Publication1
Mutagenesisi234E → K in lfy-4; decreased in vitro DNA-binding affinities and leafy phenotype. 1 Publication1
Mutagenesisi236P → L in lfy-5; decreased in vitro DNA-binding affinities and leafy phenotype. 1 Publication1
Mutagenesisi240T → M in lfy-3; leafy phenotype. 1 Publication1
Mutagenesisi287N → A: Impaired DNA-binding. 1 Publication1
Mutagenesisi302N → D in lfy-20; reduced DNA-binding affinity with a weak leafy phenotype. 1 Publication1
Mutagenesisi303K → A: Impaired DNA-binding. 1 Publication1
Mutagenesisi304P → L in lfy-28; impaired DNA-binding and strong leafy phenotype. 1 Publication1
Mutagenesisi327R → K in lfy-9; leafy phenotype. 1 Publication1

<p>This section describes post-translational modifications (PTMs) and/or processing events.<p><a href='/help/ptm_processing_section' target='_top'>More...</a></p>PTM / Processingi

Molecule processing

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘PTM / Processing’ section describes the extent of a polypeptide chain in the mature protein following processing.<p><a href='/help/chain' target='_top'>More...</a></p>ChainiPRO_00001291471 – 420Protein LEAFYAdd BLAST420

Proteomic databases

PaxDb, a database of protein abundance averages across all three domains of life

More...
PaxDbi
Q00958

PTM databases

iPTMnet integrated resource for PTMs in systems biology context

More...
iPTMneti
Q00958

<p>This section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms.<p><a href='/help/expression_section' target='_top'>More...</a></p>Expressioni

<p>This subsection of the ‘Expression’ section provides information on the expression of a gene at the mRNA or protein level in cells or in tissues of multicellular organisms. By default, the information is derived from experiments at the mRNA level, unless specified ‘at protein level’. <br></br>Examples: <a href="http://www.uniprot.org/uniprot/P92958#expression">P92958</a>, <a href="http://www.uniprot.org/uniprot/Q8TDN4#expression">Q8TDN4</a>, <a href="http://www.uniprot.org/uniprot/O14734#expression">O14734</a><p><a href='/help/tissue_specificity' target='_top'>More...</a></p>Tissue specificityi

Expressed uniformly throughout the young floral primordia.

<p>This subsection of the ‘Expression’ section provides information on the expression of the gene product at various stages of a cell, tissue or organism development. By default, the information is derived from experiments at the mRNA level, unless specified ‘at the protein level’.<p><a href='/help/developmental_stage' target='_top'>More...</a></p>Developmental stagei

Expressed at an early stage of floral initiation.

<p>This subsection of the ‘Expression’ section reports the experimentally proven effects of inducers and repressors (usually chemical compounds or environmental factors) on the level of protein (or mRNA) expression (up-regulation, down-regulation, constitutive expression).<p><a href='/help/induction' target='_top'>More...</a></p>Inductioni

Positively regulated by CAULIFLOWER and APETALA1. Down-regulated by TFL1.

Gene expression databases

ExpressionAtlas, Differential and Baseline Expression

More...
ExpressionAtlasi
Q00958 baseline and differential

Genevisible search portal to normalized and curated expression data from Genevestigator

More...
Genevisiblei
Q00958 AT

<p>This section provides information on the quaternary structure of a protein and on interaction(s) with other proteins or protein complexes.<p><a href='/help/interaction_section' target='_top'>More...</a></p>Interactioni

<p>This subsection of the <a href="http://www.uniprot.org/help/interaction_section">'Interaction'</a> section provides information about the protein quaternary structure and interaction(s) with other proteins or protein complexes (with the exception of physiological receptor-ligand interactions which are annotated in the <a href="http://www.uniprot.org/help/function_section">'Function'</a> section).<p><a href='/help/subunit_structure' target='_top'>More...</a></p>Subunit structurei

Forms homodimer when associated to DNA.

Interacts with SYD and BRM.

2 Publications

Sites

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection describes interesting single amino acid sites on the sequence that are not defined in any other subsection. This subsection can be displayed in different sections (‘Function’, ‘PTM / Processing’, ‘Pathology and Biotech’) according to its content.<p><a href='/help/site' target='_top'>More...</a></p>Sitei280Interaction with DNACombined sources1 Publication1
Sitei287Interaction with DNACombined sources1 Publication1
Sitei291Interaction with DNACombined sources1 Publication1
Sitei338Interaction with DNACombined sources1 Publication1

<p>This subsection of the '<a href="http://www.uniprot.org/help/interaction_section%27">Interaction</a> section provides information about binary protein-protein interactions. The data presented in this section are a quality-filtered subset of binary interactions automatically derived from the <a href="http://www.ebi.ac.uk/intact/">IntAct database</a>. It is updated on a monthly basis. Each binary interaction is displayed on a separate line.<p><a href='/help/binary_interactions' target='_top'>More...</a></p>Binary interactionsi

GO - Molecular functioni

Protein-protein interaction databases

The Biological General Repository for Interaction Datasets (BioGrid)

More...
BioGridi
21551, 5 interactors

Database of interacting proteins

More...
DIPi
DIP-40341N

Protein interaction database and analysis system

More...
IntActi
Q00958, 3 interactors

STRING: functional protein association networks

More...
STRINGi
3702.AT5G61850.1

<p>This section provides information on the tertiary and secondary structure of a protein.<p><a href='/help/structure_section' target='_top'>More...</a></p>Structurei

Secondary structure

1420
Legend: HelixTurnBeta strandPDB Structure known for this area
Show more details

3D structure databases

SWISS-MODEL Repository - a database of annotated 3D protein structure models

More...
SMRi
Q00958

Database of comparative protein structure models

More...
ModBasei
Search...

Protein Data Bank in Europe - Knowledge Base

More...
PDBe-KBi
Search...

Miscellaneous databases

Relative evolutionary importance of amino acids within a protein sequence

More...
EvolutionaryTracei
Q00958

<p>This section provides information on sequence similarities with other proteins and the domain(s) present in a protein.<p><a href='/help/family_and_domains_section' target='_top'>More...</a></p>Family & Domainsi

Coiled coil

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and domains’ section denotes the positions of regions of coiled coil within the protein.<p><a href='/help/coiled' target='_top'>More...</a></p>Coiled coili108 – 133Sequence analysisAdd BLAST26

Motif

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes a short (usually not more than 20 amino acids) conserved sequence motif of biological significance.<p><a href='/help/motif' target='_top'>More...</a></p>Motifi115 – 122Nuclear localization signalPROSITE-ProRule annotation8

Compositional bias

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Family and Domains’ section describes the position of regions of compositional bias within the protein and the particular amino acids that are over-represented within those regions.<p><a href='/help/compbias' target='_top'>More...</a></p>Compositional biasi23 – 37Pro-richPROSITE-ProRule annotationAdd BLAST15
Compositional biasi120 – 125Poly-GluSequence analysis6
Compositional biasi172 – 177Poly-GlySequence analysis6
Compositional biasi389 – 395Poly-AlaSequence analysis7

<p>This subsection of the ‘Family and domains’ section provides information about the sequence similarity with other proteins.<p><a href='/help/sequence_similarities' target='_top'>More...</a></p>Sequence similaritiesi

Belongs to the FLO/LFY family.Curated

Keywords - Domaini

Coiled coil

Phylogenomic databases

evolutionary genealogy of genes: Non-supervised Orthologous Groups

More...
eggNOGi
ENOG410IE4M Eukaryota
ENOG4110P9Q LUCA

The HOGENOM Database of Homologous Genes from Fully Sequenced Organisms

More...
HOGENOMi
HOG000083786

InParanoid: Eukaryotic Ortholog Groups

More...
InParanoidi
Q00958

Database of Orthologous Groups

More...
OrthoDBi
1031599at2759

Database for complete collections of gene phylogenies

More...
PhylomeDBi
Q00958

Family and domain databases

Gene3D Structural and Functional Annotation of Protein Families

More...
Gene3Di
1.10.4180.10, 1 hit

Integrated resource of protein families, domains and functional sites

More...
InterProi
View protein in InterPro
IPR035209 FLO/LFY_C
IPR002910 FLO_LFY
IPR038276 Floricaula/leafy_C_sf
IPR035079 LFY_SAM

The PANTHER Classification System

More...
PANTHERi
PTHR36079 PTHR36079, 1 hit

Pfam protein domain database

More...
Pfami
View protein in Pfam
PF17538 C_LFY_FLO, 1 hit
PF01698 SAM_LFY, 1 hit

<p>This section displays by default the canonical protein sequence and upon request all isoforms described in the entry. It also includes information pertinent to the sequence(s), including <a href="http://www.uniprot.org/help/sequence_length">length</a> and <a href="http://www.uniprot.org/help/sequences">molecular weight</a>. The information is filed in different subsections. The current subsections and their content are listed below:<p><a href='/help/sequences_section' target='_top'>More...</a></p>Sequence (1+)i

<p>This subsection of the <a href="http://www.uniprot.org/help/sequences_section">Sequence</a> section indicates if the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> displayed by default in the entry is complete or not.<p><a href='/help/sequence_status' target='_top'>More...</a></p>Sequence statusi: Complete.

This entry has 1 described isoform and 1 potential isoform that is computationally mapped.Show allAlign All

Q00958-1 [UniParc]FASTAAdd to basket
« Hide
        10         20         30         40         50
MDPEGFTSGL FRWNPTRALV QAPPPVPPPL QQQPVTPQTA AFGMRLGGLE
60 70 80 90 100
GLFGPYGIRF YTAAKIAELG FTASTLVGMK DEELEEMMNS LSHIFRWELL
110 120 130 140 150
VGERYGIKAA VRAERRRLQE EEEEESSRRR HLLLSAAGDS GTHHALDALS
160 170 180 190 200
QEGLSEEPVQ QQDQTDAAGN NGGGGSGYWD AGQGKMKKQQ QQRRRKKPML
210 220 230 240 250
TSVETDEDVN EGEDDDGMDN GNGGSGLGTE RQREHPFIVT EPGEVARGKK
260 270 280 290 300
NGLDYLFHLY EQCREFLLQV QTIAKDRGEK CPTKVTNQVF RYAKKSGASY
310 320 330 340 350
INKPKMRHYV HCYALHCLDE EASNALRRAF KERGENVGSW RQACYKPLVN
360 370 380 390 400
IACRHGWDID AVFNAHPRLS IWYVPTKLRQ LCHLERNNAV AAAAALVGGI
410 420
SCTGSSTSGR GGCGGDDLRF
Length:420
Mass (Da):46,582
Last modified:September 22, 2009 - v2
<p>The checksum is a form of redundancy check that is calculated from the sequence. It is useful for tracking sequence updates.</p> <p>It should be noted that while, in theory, two different sequences could have the same checksum value, the likelihood that this would happen is extremely low.</p> <p>However UniProtKB may contain entries with identical sequences in case of multiple genes (paralogs).</p> <p>The checksum is computed as the sequence 64-bit Cyclic Redundancy Check value (CRC64) using the generator polynomial: x<sup>64</sup> + x<sup>4</sup> + x<sup>3</sup> + x + 1. The algorithm is described in the ISO 3309 standard. </p> <p class="publication">Press W.H., Flannery B.P., Teukolsky S.A. and Vetterling W.T.<br /> <strong>Cyclic redundancy and other checksums</strong><br /> <a href="http://www.nrbook.com/b/bookcpdf.php">Numerical recipes in C 2nd ed., pp896-902, Cambridge University Press (1993)</a>)</p> Checksum:i952268D52E035CFF
GO

<p>In eukaryotic reference proteomes, unreviewed entries that are likely to belong to the same gene are computationally mapped, based on gene identifiers from Ensembl, EnsemblGenomes and model organism databases.<p><a href='/help/gene_centric_isoform_mapping' target='_top'>More...</a></p>Computationally mapped potential isoform sequencesi

There is 1 potential isoform mapped to this entry.BLASTAlignShow allAdd to basket
EntryEntry nameProtein names
Gene namesLengthAnnotation
A0A1P8BDB4A0A1P8BDB4_ARATH
Floral meristem identity control pr...
LFY LEAFY, LEAFY 3, LFY3, MAC9.13, MAC9_13
424Annotation score:

Annotation score:2 out of 5

<p>The annotation score provides a heuristic measure of the annotation content of a UniProtKB entry or proteome. This score <strong>cannot</strong> be used as a measure of the accuracy of the annotation as we cannot define the ‘correct annotation’ for any given protein.<p><a href='/help/annotation_score' target='_top'>More...</a></p>

<p>This subsection of the ‘Sequence’ section reports difference(s) between the protein sequence shown in the UniProtKB entry and other available protein sequences derived from the same gene.<p><a href='/help/sequence_caution' target='_top'>More...</a></p>Sequence cautioni

The sequence AAA32826 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27927 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27928 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27929 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27930 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27931 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27932 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27933 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27934 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27935 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27936 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27937 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27938 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27939 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27940 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence AAM27941 differs from that shown. Reason: Erroneous gene model prediction.Curated
The sequence ABK28773 differs from that shown. Reason: Erroneous termination. Extended C-terminus.Curated
The sequence BAB10085 differs from that shown. Reason: Erroneous gene model prediction.Curated

Natural variant

Feature keyPosition(s)DescriptionActionsGraphical viewLength
<p>This subsection of the ‘Sequence’ section describes natural variant(s) of the protein sequence.<p><a href='/help/variant' target='_top'>More...</a></p>Natural varianti8S → R in strain: cv. Jl-1. 1
Natural varianti78G → D in strain: cv. Ita-0. 1

Sequence databases

Select the link destinations:

EMBL nucleotide sequence database

More...
EMBLi

GenBank nucleotide sequence database

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GenBanki

DNA Data Bank of Japan; a nucleotide sequence database

More...
DDBJi
Links Updated
M91208 Genomic DNA Translation: AAA32826.1 Sequence problems.
AF466787 Genomic DNA Translation: AAM27927.1 Sequence problems.
AF466788 Genomic DNA Translation: AAM27928.1 Sequence problems.
AF466789 Genomic DNA Translation: AAM27929.1 Sequence problems.
AF466790 Genomic DNA Translation: AAM27930.1 Sequence problems.
AF466791 Genomic DNA Translation: AAM27931.1 Sequence problems.
AF466792 Genomic DNA Translation: AAM27932.1 Sequence problems.
AF466793 Genomic DNA Translation: AAM27933.1 Sequence problems.
AF466794 Genomic DNA Translation: AAM27934.1 Sequence problems.
AF466795 Genomic DNA Translation: AAM27935.1 Sequence problems.
AF466796 Genomic DNA Translation: AAM27936.1 Sequence problems.
AF466797 Genomic DNA Translation: AAM27937.1 Sequence problems.
AF466798 Genomic DNA Translation: AAM27938.1 Sequence problems.
AF466799 Genomic DNA Translation: AAM27939.1 Sequence problems.
AF466800 Genomic DNA Translation: AAM27940.1 Sequence problems.
AF466801 Genomic DNA Translation: AAM27941.1 Sequence problems.
AB010069 Genomic DNA Translation: BAB10085.1 Sequence problems.
CP002688 Genomic DNA Translation: AED97525.1
DQ447103 mRNA Translation: ABE66271.1
DQ653389 mRNA Translation: ABK28773.1 Sequence problems.

Protein sequence database of the Protein Information Resource

More...
PIRi
A38104
B38104
C38104

NCBI Reference Sequences

More...
RefSeqi
NP_001331273.1, NM_001345500.1
NP_200993.1, NM_125579.1

Genome annotation databases

Ensembl plant genome annotation project

More...
EnsemblPlantsi
AT5G61850.1; AT5G61850.1; AT5G61850

Database of genes from NCBI RefSeq genomes

More...
GeneIDi
836307

Gramene; a comparative resource for plants

More...
Gramenei
AT5G61850.1; AT5G61850.1; AT5G61850

KEGG: Kyoto Encyclopedia of Genes and Genomes

More...
KEGGi
ath:AT5G61850

Keywords - Coding sequence diversityi

Polymorphism

<p>This section provides links to proteins that are similar to the protein sequence(s) described in this entry at different levels of sequence identity thresholds (100%, 90% and 50%) based on their membership in UniProt Reference Clusters (<a href="http://www.uniprot.org/help/uniref">UniRef</a>).<p><a href='/help/similar_proteins_section' target='_top'>More...</a></p>Similar proteinsi

<p>This section is used to point to information related to entries and found in data collections other than UniProtKB.<p><a href='/help/cross_references_section' target='_top'>More...</a></p>Cross-referencesi

Sequence databases

Select the link destinations:
EMBLi
GenBanki
DDBJi
Links Updated
M91208 Genomic DNA Translation: AAA32826.1 Sequence problems.
AF466787 Genomic DNA Translation: AAM27927.1 Sequence problems.
AF466788 Genomic DNA Translation: AAM27928.1 Sequence problems.
AF466789 Genomic DNA Translation: AAM27929.1 Sequence problems.
AF466790 Genomic DNA Translation: AAM27930.1 Sequence problems.
AF466791 Genomic DNA Translation: AAM27931.1 Sequence problems.
AF466792 Genomic DNA Translation: AAM27932.1 Sequence problems.
AF466793 Genomic DNA Translation: AAM27933.1 Sequence problems.
AF466794 Genomic DNA Translation: AAM27934.1 Sequence problems.
AF466795 Genomic DNA Translation: AAM27935.1 Sequence problems.
AF466796 Genomic DNA Translation: AAM27936.1 Sequence problems.
AF466797 Genomic DNA Translation: AAM27937.1 Sequence problems.
AF466798 Genomic DNA Translation: AAM27938.1 Sequence problems.
AF466799 Genomic DNA Translation: AAM27939.1 Sequence problems.
AF466800 Genomic DNA Translation: AAM27940.1 Sequence problems.
AF466801 Genomic DNA Translation: AAM27941.1 Sequence problems.
AB010069 Genomic DNA Translation: BAB10085.1 Sequence problems.
CP002688 Genomic DNA Translation: AED97525.1
DQ447103 mRNA Translation: ABE66271.1
DQ653389 mRNA Translation: ABK28773.1 Sequence problems.
PIRiA38104
B38104
C38104
RefSeqiNP_001331273.1, NM_001345500.1
NP_200993.1, NM_125579.1

3D structure databases

Select the link destinations:

Protein Data Bank Europe

More...
PDBei

Protein Data Bank RCSB

More...
RCSB PDBi

Protein Data Bank Japan

More...
PDBji
Links Updated
PDB entryMethodResolution (Å)ChainPositionsPDBsum
2VY1X-ray2.10A227-420[»]
2VY2X-ray2.30A227-420[»]
SMRiQ00958
ModBaseiSearch...
PDBe-KBiSearch...

Protein-protein interaction databases

BioGridi21551, 5 interactors
DIPiDIP-40341N
IntActiQ00958, 3 interactors
STRINGi3702.AT5G61850.1

PTM databases

iPTMnetiQ00958

Proteomic databases

PaxDbiQ00958

Genome annotation databases

EnsemblPlantsiAT5G61850.1; AT5G61850.1; AT5G61850
GeneIDi836307
GrameneiAT5G61850.1; AT5G61850.1; AT5G61850
KEGGiath:AT5G61850

Organism-specific databases

AraportiAT5G61850
TAIRilocus:2159208 AT5G61850

Phylogenomic databases

eggNOGiENOG410IE4M Eukaryota
ENOG4110P9Q LUCA
HOGENOMiHOG000083786
InParanoidiQ00958
OrthoDBi1031599at2759
PhylomeDBiQ00958

Miscellaneous databases

EvolutionaryTraceiQ00958

Protein Ontology

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PROi
PR:Q00958

Gene expression databases

ExpressionAtlasiQ00958 baseline and differential
GenevisibleiQ00958 AT

Family and domain databases

Gene3Di1.10.4180.10, 1 hit
InterProiView protein in InterPro
IPR035209 FLO/LFY_C
IPR002910 FLO_LFY
IPR038276 Floricaula/leafy_C_sf
IPR035079 LFY_SAM
PANTHERiPTHR36079 PTHR36079, 1 hit
PfamiView protein in Pfam
PF17538 C_LFY_FLO, 1 hit
PF01698 SAM_LFY, 1 hit

ProtoNet; Automatic hierarchical classification of proteins

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ProtoNeti
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MobiDB: a database of protein disorder and mobility annotations

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MobiDBi
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<p>This section provides general information on the entry.<p><a href='/help/entry_information_section' target='_top'>More...</a></p>Entry informationi

<p>This subsection of the ‘Entry information’ section provides a mnemonic identifier for a UniProtKB entry, but it is not a stable identifier. Each reviewed entry is assigned a unique entry name upon integration into UniProtKB/Swiss-Prot.<p><a href='/help/entry_name' target='_top'>More...</a></p>Entry nameiLFY_ARATH
<p>This subsection of the ‘Entry information’ section provides one or more accession number(s). These are stable identifiers and should be used to cite UniProtKB entries. Upon integration into UniProtKB, each entry is assigned a unique accession number, which is called ‘Primary (citable) accession number’.<p><a href='/help/accession_numbers' target='_top'>More...</a></p>AccessioniPrimary (citable) accession number: Q00958
Secondary accession number(s): A0MFR2
, Q1PDG5, Q8LSH2, Q8LSH3
<p>This subsection of the ‘Entry information’ section shows the date of integration of the entry into UniProtKB, the date of the last sequence update and the date of the last annotation modification (‘Last modified’). The version number for both the entry and the <a href="http://www.uniprot.org/help/canonical_and_isoforms">canonical sequence</a> are also displayed.<p><a href='/help/entry_history' target='_top'>More...</a></p>Entry historyiIntegrated into UniProtKB/Swiss-Prot: April 1, 1993
Last sequence update: September 22, 2009
Last modified: October 16, 2019
This is version 144 of the entry and version 2 of the sequence. See complete history.
<p>This subsection of the ‘Entry information’ section indicates whether the entry has been manually annotated and reviewed by UniProtKB curators or not, in other words, if the entry belongs to the Swiss-Prot section of UniProtKB (<strong>reviewed</strong>) or to the computer-annotated TrEMBL section (<strong>unreviewed</strong>).<p><a href='/help/entry_status' target='_top'>More...</a></p>Entry statusiReviewed (UniProtKB/Swiss-Prot)
Annotation programPlant Protein Annotation Program

<p>This section contains any relevant information that doesn’t fit in any other defined sections<p><a href='/help/miscellaneous_section' target='_top'>More...</a></p>Miscellaneousi

Keywords - Technical termi

3D-structure, Complete proteome, Reference proteome

Documents

  1. PDB cross-references
    Index of Protein Data Bank (PDB) cross-references
  2. SIMILARITY comments
    Index of protein domains and families
  3. Arabidopsis thaliana
    Arabidopsis thaliana: entries and gene names
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